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feat/db: add database persistence#42

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rudyardrichter merged 125 commits intomasteruc-cdis/arborist:masterfrom feat/dbuc-cdis/arborist:feat/dbCopy head branch name to clipboardMay 14, 2019

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Commits on Feb 25, 2019

• feat(db): work on v0 migrations

  

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Commits on Feb 26, 2019

• feat(db): work on db schema

  

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Commits on Mar 19, 2019

• feat(db): add endpoints for models

  

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• feat(db): add token decoder

  

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• feat(db): add grp_policy table

  

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• feat(db-test): work on tests

  

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Commits on Mar 20, 2019

• feat(db-test): add role & policy tests, bug fixes

  

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• feat(db-test): fix indentation on JSON inputs

  

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• feat(db-test): work on auto migration script

  

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Commits on Mar 21, 2019

• feat(db-test): fix travis

  

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• feat(db-test): add more migration utilities

  

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• feat(db-test): fix example test

  

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• Merge pull request #41 from uc-cdis/feat/db-test

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• feat(db): add docs for resource path formatters

  

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• feat(resource-rules): add yacc

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• feat(auth): added auth/request

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• chore(indent): simplify code layout

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• fix(resource): format path for DB

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• chore(resource): code review fix

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Commits on Mar 22, 2019

• Merge pull request #40 from uc-cdis/feat/resource-rules

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• feat(user-api): work on user endpoints & tests

  

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Commits on Mar 25, 2019

• feat(user-api): add note about migrations

  

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• Merge pull request #44 from uc-cdis/feat/user-api

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• feat(groups): add groups & policies APIs

  

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• feat(auth-resources): work on /auth/resources

  

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Commits on Mar 27, 2019

• feat(auth-resources): add tests

  

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• feat(groups): finish groups api, make crfs

  

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• feat(groups): add group policy endpoints

  

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Commits on Mar 28, 2019

• Merge pull request #45 from uc-cdis/feat/groups

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Commits on Mar 29, 2019

• feat(docs): work on openapi, readme, help

  

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• feat(docs): misc fixes, readme + travis file

  

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• feat(docs): remove "engine" from openapi docs

  

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• Merge pull request #48 from uc-cdis/feat/docs

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Commits on Apr 1, 2019

• Merge branch 'master' into feat/db

  

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Commits on Apr 2, 2019

• feat(db): fix logging bug for go 1.12

  

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• feat(db): add more documentation

  

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Commits on Apr 3, 2019

• fix(auth-grp): add group check in auth request

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• Merge pull request #49 from uc-cdis/fix/auth-grp

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• feat(db): fix tag in swagger docs

  

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Commits on Apr 4, 2019

• feat(revoke-all): add endpoint to revoke all policies

  

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• feat(db): tweak test command

  

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• Merge branch 'feat/db' into feat/revoke-all

  

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• feat(revoke-all): update documentation

  

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• Merge pull request #50 from uc-cdis/feat/revoke-all

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Commits on Apr 8, 2019

• feat(db): improve router

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Commits on Apr 9, 2019

• feat(db): add note on docker

  

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• fix(resource): fix resource API for subresources

  

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• fix(resource): add test

  

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Commits on Apr 10, 2019

• test(auth): add tests for /auth/request

  

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• test(auth): add some tests for auth proxy endpoint

  

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Commits on Apr 12, 2019

• test(auth): add more makefile utilities

  

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• test(auth): remove unused error functions

  

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• test(auth): fix auth UnmarshalJSON

  

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• test(auth): fix error response from /auth/proxy

  

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• test(auth): add bug fixes and more tests

  

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Commits on Apr 15, 2019

• test(auth): more tests

  

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• test(auth): fix makefile

  

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• Merge pull request #52 from uc-cdis/test/auth

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Commits on Apr 16, 2019

• feat(tag): add unique tag identifiers for resources

  

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• Merge branch 'feat/db' into fix/resource

  

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• Merge pull request #55 from uc-cdis/fix/resource

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• Merge branch 'feat/db' into feat/tag

  

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• feat(tag): add test

  

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• feat(tag): fix migration with bytea function

  

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Commits on Apr 17, 2019

• feat(tag): fix query

  

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• Merge pull request #56 from uc-cdis/feat/tag

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Commits on Apr 18, 2019

• feat(anon): add support for builtin groups; tests

  

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• feat(anon): add more explanation on access in README

  

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• fix(no-root): remove "root" resource from model

  

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• Merge pull request #59 from uc-cdis/fix/no-root

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Commits on Apr 19, 2019

• Merge pull request #58 from uc-cdis/feat/anon

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• add bash to installed packages

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• add jq for easily manipulating json

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• Create DockerfileAlpine

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Commits on Apr 22, 2019

• Update Dockerfile

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• Update ENTRYPOINT

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• Update Dockerfile

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• Update Dockerfile

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Commits on Apr 23, 2019

• feat(bulk-auth): support requests in auth request

  

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• feat(bulk-auth): add note in docs for requests

  

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• Merge pull request #60 from uc-cdis/feat/bulk-auth

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• feat(db): fix content-type in response

  

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• feat(db): add resource validation & tests

  

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• feat(db): add note in docs about allowed chars

  

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• test(db): add more tests, fix response codes

  

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Commits on Apr 24, 2019

• Create Jenkinsfile

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• feat(star): support * for service/method

  

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• Update Jenkinsfile

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• test(db): test policy create error cases

  

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• test(db): test resource create error case

  

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Commits on Apr 25, 2019

• Merge pull request #62 from uc-cdis/feat/star

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Commits on Apr 30, 2019

• feat(db): add resource input validation

  

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• feat(db): fix resource tx logic

  

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Commits on May 1, 2019

• PXD-2730: client permission (#53)

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• docs(grant-policy): fix docs (#63)

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Commits on May 6, 2019

• feat(put-policy): add PUT /policy endpoint

  

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• Merge branch 'feat/db' into test/db

  

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• feat(put-policy): add sql transactify

  

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• feat(put-policy): add doc for transactify

  

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• Merge pull request #65 from uc-cdis/feat/put-policy

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Commits on May 7, 2019

• Merge pull request #61 from uc-cdis/test/db

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• feat(db): add note about deleting groups

  

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• fix(group-create): fix create with users & policies

  

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• Merge pull request #67 from uc-cdis/fix/group-create

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• feat(db): add distinct for group listing

  

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Commits on May 8, 2019

• feat(db): fix response for role missing permissions

  

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Commits on May 9, 2019

• feat(db): add FIXME

  

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• feat(db): list user authorized resources

  

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• feat(db): allow not passing client ID

  

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• feat(db): logging overhaul

  

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• feat(db): add docs on logging

  

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• feat(db): fix log caller info

  

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• Update server.go

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• feat(db): add logs for auth request

  

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• feat(db): fix user resources listing

  

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• feat(db): fix client access for * permissions

  

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Commits on May 10, 2019

• feat(db): small logs refactor, improve docs

  

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• feat(db): improve logs, allow all logs in tests

  

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• feat(put-group): support PUT /group

  

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• Merge pull request #68 from uc-cdis/feat/put-group

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• feat(db): add log for group creation

  

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Commits on May 13, 2019

• PXD-3049: force create resource (#66)

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• feat(db): update docs for auth request

  

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Commits on May 14, 2019

• feat(db): remove builtin groups from delete

  

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• feat(db): array aggs should be distinct

  

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