v0.10.0

Enhancements

• Added teal.logger functionality for logging changes in shiny inputs in all modules.
• Introduced ylim parameter for tm_g_km module that controls width of y-axis.
• Added functionality to tm_t_events_patyear to split columns by multiple (nested) variables via the arm_var argument.
• Added arguments arm_var_labels to template_summary and show_arm_var_labels to tm_t_summary to allow user to display arm variable (arm_var) labels in table header.
• Added argument stats to modules tm_g_forest_rsp and tm_g_forest_tte to allow users to specify statistics to include in the table.
• Added argument riskdiff to modules tm_g_forest_rsp and tm_g_forest_tte to allow users to add a risk difference table column.
• Added the count_dth and count_wd parameters to tm_t_events_summary to select/deselect the "Total number of deaths" and "Total number of patients withdrawn from study due to an AE" rows, respectively. These options correspond to the "Count deaths" and "Count withdrawals due to AE" checkboxes available when the module is run.
• Added the title_text argument to tm_t_mult_events to allow for more customization of the module's dynamic title.
• Introduced transformators and decorators argument to modules.

Bug fixes

• Fixed bug in creating modules with delayed_data and teal.transform::all_choices.
• Fixed bug in tm_g_forest_tte and tm_g_forest_rsp to resolve delayed data loading variables.

Miscellaneous

• Removed Show Warnings modals from modules.
• Clarified the documentation specifying whether multiple values can be selected in the arm_var argument for each module.
• Replaced use of the rtables::add_colcounts() function with the show_colcounts argument to basic_table().
• Began deprecation cycle for the show_labels argument of template_summary which has no effect on the tm_t_summary module.
• Replaced instances of deprecated strata argument to tern::control_lineplot_vars() with group_var.
• Added an assertion to tm_t_events_summary() to check whether all datasets used have the same treatment variable levels.

What's Changed

• Workflow propagation by @walkowif in #1102
• 1175 fixing validation on col_by_var variable. by @kartikeyakirar in #1178
• 1149 introduce ylim parameter for tm_g_km module by @m7pr in #1177
• 1108 {shinytest2} feature branch by @m7pr in #1126
• 1176 remove Show Warnings from modules by @m7pr in #1180
• 227 utilize logger::log_shiny_input_change by @m7pr in #1182
• truetype font support checking PR by @gmbecker in #1188
• Bumps {rmarkdown} minimal version by @averissimo in #1186
• increase rtables dep version by @ayogasekaram in #1195
• testing for rtables higher level ns PR by @gmbecker in #1190
• 553 change level in log_shiny_input_changes and exclude plot sizes in logging by @m7pr in #1191
• Update DESCRIPTION by @shajoezhu in #1196
• Fix documentation of arm_var argument in modules by @edelarua in #1201
• Add functionality to tm_t_events_patyear to split columns by multiple (nested) variables by @edelarua in #1203
• Replace use of add_colcounts with the show_colcounts argument by @edelarua in #1207
• Add option to tm_t_summary to include arm_var labels in table header by @edelarua in #1205
• Workflow propagations by @walkowif in #1208
• Add stats and risk difference parameters to forest plot modules by @edelarua in #1210
• Fix teal namespace for broken tests by @vedhav in #1213
• Add options to toggle the "Total deaths" and "Total withdrawals due to AE" rows in tm_t_events_summary by @edelarua in #1216
• Update DESCRIPTION by @pawelru in #1217
• Use group_var argument to control_lineplot_vars instead of deprecated strata by @edelarua in #1223
• update readme by @pawelru in #1218
• fix: changed the separator in h_concat_expr by @kpagacz in #1226
• Workflow propagations by @walkowif in #1219
• Update DESCRIPTION tern to 0.9.6 by @shajoezhu in #1227
• reset factor level during validate by @donyunardi in #1229
• Update scheduled.yaml by @pawelru in #1220
• use of roxy.shinylive by @pawelru in #1230
• add rmarkdown to VignetteBuilder by @pawelru in #1237
• Adds roxy.shinylive to pre-commit configuration by @averissimo in #1238
• teal.data::datanames() is deprecated in favor of dot-prefix and names() by @averissimo in #1239
• 1248 Fix shinytest2 tests by @m7pr in #1251
• Update tm_t_summary_by() column variable text by @edelarua in #1247
• upversion teal.report, rtables, rtables.officer by @shajoezhu in #1250
• update strata var to group_var by @ayogasekaram in #1246
• Bring back tests for tm_g_pp_therapy by @vedhav in #1271
• fixes error in adverse events when ASTDY is of difftime type by @averissimo in #1284
• Fix tmc integration test - Wait for shiny app idle after fit is clicked by @vedhav in #1296
• add setup-r-dependencies by @vedhav in #1297
• Fix documentation note about links on r-devel by @llrs-roche in #1299
• Stop R process if AppDriver fails in test-examples by @averissimo in #1303
• 🗃️ Decorators feature branch by @averissimo in #1252
• 1305 allow delayed data to pass in cs_to_des_select by @chlebowa in #1306
• upversion dep by @shajoezhu in #1308
• Fix logger by @gogonzo in #1312
• Show only datasets used by @llrs-roche in #1309
• Update DESCRIPTION by @shajoezhu in #1315
• update packages for the scheduled build by @m7pr in #1314
• 1441 Introduce transformators parameter in modules by @m7pr in #1313
• vbump teal.logger by @m7pr in #1319
• add Remotes to DESCRIPTION by @m7pr in #1321
• simplify builds dependencies of extra-deps by @m7pr in #1318
• Update teal.reporter version by @m7pr in #1322
• vbump teal.code by @m7pr in #1323
• vbump teal.data by @m7pr in #1326
• Make sure the code chunks does not break because of warnings by @vedhav in #1327
• vbump teal.widgets by @m7pr in #1328
• Duplicated decorators during an edge case of named and unnamed decorators by @m7pr in #1325
• Add title_text argument to tm_t_mult_events() to control dynamic title by @edelarua in #1334
• update tm_g_forest_tte by @shajoezhu in #1336
• vbump teal.transform by @m7pr in #1341
• Add treatment var levels assertion to tm_t_events_summary() by @edelarua in #1345
• Update DESCRIPTION by @shajoezhu in #1346
• Faster check times on CI by @llrs-roche in #1347
• Remove default decorator and update docs by @vedhav in #1348
• Switch to DT::datatable decoration where applicable by @vedhav in #1350
• fix: make sure the decoration is applied to the forest plots by @vedhav in #1351
• vbump teal by @m7pr in #1352
• Add vignettes on decorators by @vedhav in #1353
• wrap within expr in {} to potentially cheat r cmd check by @gogonzo in #1355
• Fix "no visible binding for global variable" by @gogonzo in #1354
• [skip vbump] upversion v0.10.0 by @donyunardi in #1356

New Contributors

• @gmbecker made their first contribution in #1188

Full Changelog: v0.9.1...v0.10.0