ec.source in getStandardKcat

[Yu-sysbio]

getStandardKcat allows to assign kcats for reactions without any associated genes, and then mark in .ec.source with 'standard'.
It can also assign kcats for the reactions with genes but not assigned kcats by previous steps e.g. BRENDA and DLKcat, but the .ec.source is marked with empty, i.e. ''. I am wondering if this should also be marked with 'standard'.

Given that 'brenda' and 'dlkcat' mean the kcat source, does 'standard' mean the kcat itself, or the enzyme, kcat and molecular weight as a whole?

[ae-tafur]

I agree.

Given that 'brenda' and 'dlkcat' mean the kcat source, does 'standard' mean the kcat itself, or the enzyme, kcat and molecular weight as a whole?

It means the kcat itself

[edkerk]

I can fix this, while addressing #280.