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gdas_init utility bug fix #912

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merged 9 commits into from
Mar 13, 2024
Merged

gdas_init utility bug fix #912

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5f93dc3
Fix bug for v15 data on Hera.
GeorgeGayno-NOAA Mar 8, 2024
3d685b6
Update run_v16retro.chgres.sh for input orog directory.
GeorgeGayno-NOAA Mar 8, 2024
ba985d4
Update jet driver script.
GeorgeGayno-NOAA Mar 8, 2024
2cb6941
Updates for wcoss2.
GeorgeGayno-NOAA Mar 8, 2024
86d42b3
Update set_fixed_files.sh for Jet.
GeorgeGayno-NOAA Mar 8, 2024
16b1f9b
Updates for s4.
GeorgeGayno-NOAA Mar 8, 2024
5a92fdb
Point to v2.1.1 of prod_util on 's4'.
GeorgeGayno-NOAA Mar 11, 2024
5f15470
Merge branch 'develop' into bugfix/gi
GeorgeGayno-NOAA Mar 11, 2024
60d3cbf
Add some comments to set_fixed_files.sh.
GeorgeGayno-NOAA Mar 11, 2024
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2 changes: 2 additions & 0 deletions util/gdas_init/driver.hera.sh
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Expand Up @@ -21,6 +21,8 @@ module load prod_util/1.1.0
PROJECT_CODE=fv3-cpu
QUEUE=batch

export machine=hera

source config

if [ $EXTRACT_DATA == yes ]; then
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4 changes: 3 additions & 1 deletion util/gdas_init/driver.jet.sh
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Expand Up @@ -20,8 +20,10 @@ PROJECT_CODE=hfv3gfs
QUEUE=batch
PARTITION=xjet

export machine=jet

# Needed for NDATE utility
module load prod_util/1.2.2
module load prod_util/2.1.1

source config

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4 changes: 3 additions & 1 deletion util/gdas_init/driver.s4.sh
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Expand Up @@ -15,13 +15,15 @@ module load build.$target.$compiler
module list

# Needed for NDATE utility
module load prod_util/1.2.2
module load prod_util/2.1.1

PROJECT_CODE=star
QUEUE=s4

source config

export machine=s4

if [ $EXTRACT_DATA == yes ]; then

echo "HPSS is not accessible from S4! If you wish to run just the chgres portion, set EXTRACT_DATA=NO in the config file and try again."
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2 changes: 2 additions & 0 deletions util/gdas_init/driver.wcoss2.sh
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Expand Up @@ -21,6 +21,8 @@ PROJECT_CODE=GFS-DEV

source config

export machine=wcoss2

this_dir=$PWD

if [ $EXTRACT_DATA == yes ]; then
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4 changes: 2 additions & 2 deletions util/gdas_init/run_v15.chgres.sh
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Expand Up @@ -47,8 +47,8 @@ cat << EOF > fort.41
mosaic_file_target_grid="${FIX_ORO}/${ORO_DIR}/${CTAR}_mosaic.nc"
orog_dir_target_grid="${FIX_ORO}/${ORO_DIR}"
orog_files_target_grid="${ORO_NAME}.tile1.nc","${ORO_NAME}.tile2.nc","${ORO_NAME}.tile3.nc","${ORO_NAME}.tile4.nc","${ORO_NAME}.tile5.nc","${ORO_NAME}.tile6.nc"
mosaic_file_input_grid="${FIX_ORO}/${CINP}/${CINP}_mosaic.nc"
orog_dir_input_grid="${FIX_ORO}/${CINP}"
mosaic_file_input_grid="${FIX_ORO_INPUT}/${CINP}/${CINP}_mosaic.nc"
orog_dir_input_grid="${FIX_ORO_INPUT}/${CINP}"
orog_files_input_grid="${CINP}_oro_data.tile1.nc","${CINP}_oro_data.tile2.nc","${CINP}_oro_data.tile3.nc","${CINP}_oro_data.tile4.nc","${CINP}_oro_data.tile5.nc","${CINP}_oro_data.tile6.nc"
data_dir_input_grid="${INPUT_DATA_DIR}"
atm_core_files_input_grid="${YMDH}.fv_core.res.tile1.nc","${YMDH}.fv_core.res.tile2.nc","${YMDH}.fv_core.res.tile3.nc","${YMDH}.fv_core.res.tile4.nc","${YMDH}.fv_core.res.tile5.nc","${YMDH}.fv_core.res.tile6.nc","${YMDH}.fv_core.res.nc"
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4 changes: 2 additions & 2 deletions util/gdas_init/run_v16retro.chgres.sh
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Expand Up @@ -65,8 +65,8 @@ cat << EOF > fort.41
mosaic_file_target_grid="${FIX_ORO}/${ORO_DIR}/${CTAR}_mosaic.nc"
orog_dir_target_grid="${FIX_ORO}/${ORO_DIR}"
orog_files_target_grid="${ORO_NAME}.tile1.nc","${ORO_NAME}.tile2.nc","${ORO_NAME}.tile3.nc","${ORO_NAME}.tile4.nc","${ORO_NAME}.tile5.nc","${ORO_NAME}.tile6.nc"
mosaic_file_input_grid="${FIX_ORO}/${CINP}/${CINP}_mosaic.nc"
orog_dir_input_grid="${FIX_ORO}/${CINP}"
mosaic_file_input_grid="${FIX_ORO_INPUT}/${CINP}/${CINP}_mosaic.nc"
orog_dir_input_grid="${FIX_ORO_INPUT}/${CINP}"
orog_files_input_grid="${CINP}_oro_data.tile1.nc","${CINP}_oro_data.tile2.nc","${CINP}_oro_data.tile3.nc","${CINP}_oro_data.tile4.nc","${CINP}_oro_data.tile5.nc","${CINP}_oro_data.tile6.nc"
data_dir_input_grid="${INPUT_DATA_DIR}"
atm_core_files_input_grid="${YMDH}.fv_core.res.tile1.nc","${YMDH}.fv_core.res.tile2.nc","${YMDH}.fv_core.res.tile3.nc","${YMDH}.fv_core.res.tile4.nc","${YMDH}.fv_core.res.tile5.nc","${YMDH}.fv_core.res.tile6.nc","${YMDH}.fv_core.res.nc"
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23 changes: 22 additions & 1 deletion util/gdas_init/set_fixed_files.sh
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
#!/bin/bash

#---------------------------------------------------------------------------
# Set directory names and file names for orog data.
# Set directory names and file names for the target grid orog data.
#---------------------------------------------------------------------------

if [ ${CTAR} == 'C48' ] ; then
Expand All @@ -22,3 +22,24 @@ fi

ORO_DIR="${CTAR}"
ORO_NAME="${CTAR}.mx${OCNRES}_oro_data"

#---------------------------------------------------------------------------
# When using the v15/v16 tiled warm restart data as input to the chgres
# step, the input grid orography is needed (there is no orography record
# in the restart files). Since the restart data was created before the
# latest orog version (20231027), need to use a previous version.
#---------------------------------------------------------------------------

if [ "$machine" = 'hera' ] ; then
FIX_ORO_INPUT=/scratch1/NCEPDEV/global/glopara/fix/orog/20230615
elif [ "$machine" = 'wcoss2' ] ; then
FIX_ORO_INPUT=/lfs/h2/emc/global/noscrub/emc.global/FIX/fix/orog/20230615
elif [ "$machine" = 'jet' ] ; then
FIX_ORO_INPUT=/lfs4/HFIP/hfv3gfs/glopara/git/fv3gfs/fix/orog/20230615
elif [ "$machine" = 's4' ] ; then
FIX_ORO_INPUT=/data/prod/glopara/fix/orog/20230615
else
set +x
echo ERROR machine $machine not supported.
exit 3
fi
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