Gen3 Monthly Release 2023.09 staging.chords-health.org 1694128163

[PlanXCyborg]

Applying version 2023.09 to staging.chords-health.org

[github-actions]

staging.chords-health.org/manifest.json

Deployment changes

• fence
  • Update fence-config.yaml to include parent_to_child_studies_mapping to define parent/child relationships within the dbGaP block of the config. (feat(PXP-10776): Cascading Authorization fence#1102)
• guppy
  • update node from 14 to 16 (update node to 16 guppy#219)
• indexd
  • New columns added to index_record table. Alembic migration needed. (feat(DCF-450): Add DRS Fields indexd#357)
• manifestservice
  • ManifestService does not expect aws_access_key_id and aws_secret_access_key settings anymore. Instead, the service relies on AWS EKS IRSA credentials mounted to the pod. See https://github.com/uc-cdis/manifestservice/blob/master/docs/credentials_breaking_change.md for more details (feat(IAM-SA): Removed AKID references to use IAM SA role instead manifestservice#32)
• portal
  • will require server to also be using guppy ^0.16.0 on backend (chore/updateGuppy: updating guppy to 0.16.0 data-portal#1309)

Breaking changes

• fence
  • Removed most Prometheus support (feat(google_update): updated Flask and deps, also don't fail early with Google errors PXP-10900 fence#1086)
• indexd
  • DRS responses for update_time and created_time reflect the content's updated and created times, not the time they were indexed or their index record was updated. (feat(DCF-450): Add DRS Fields indexd#357)