Gen3 Monthly Release 2022.09 staging.midrc.org 1662754403

[PlanXCyborg]

Applying version 2022.09 to staging.midrc.org

[PlanXCyborg]

staging.midrc.org/manifest.json

Deployment changes

• fence
  • Requires a Fence DB migration (Client.redirect_uri is now optional) (PXP-10113 Client credentials grant fence#1033)

[PlanXCyborg]

staging.midrc.org/manifest.json

Deployment changes

• metadata
  • Database migration for MDS (PXP-10258 feat/alias metadata-service#63)

Breaking changes

• portal
  • Replaced loading the data in iframes in Workspace page with Redirect component. (Add Workspace Registration to Data-Portal data-portal#1067)
  • Deprecating the use of default-workspaces i. e an individual commons will no longer be able to deploy standalone jupyterhub images, they may use hatchery service instead. (Add Workspace Registration to Data-Portal data-portal#1067)
  • studyRegistrationConfig in gitops.json must now be placed within the regsitrationConfigs.features block [Refer this PR] (Add Workspace Registration to Data-Portal data-portal#1067)

[PlanXCyborg]

staging.midrc.org/manifest.json

Deployment changes

• metadata
  • Database migration for MDS (PXP-10258 feat/alias metadata-service#63)

Breaking changes

• indexd
  • Ensure you are using Fence>=2021.10. Remove deprecated GA4GH access endpoints. these have existed (and been used) from the Fence microservice since last year. See cloud automation change here (fix(migrate): improve acl->authz migration, remove deprecated endpoints indexd#336)