Fix reduced tarball configuration (#11976) #11977

bartlettroscoe · 2023-06-15T02:31:58Z

Fixes #11976

NOTE: I will move the TriBITS commit 40e37d9 to the main TriBITS repo and add a test to better protect this use case. (Seems TriBITS is not actually testing the configure of the reduced tarball, only the deleting of the non-enabled package directories. I will update the test to check the actual configure of the reduced tarball.)

This is also a TriBITS Trilinos package so if it is not enabled, then it gets excluded. I am not sure this is the right thing to do but for now, it fixes the immediate problem reported in #11976.

This is a temp fix the TriBITS that makes building from a reduced tarball work.

ndellingwood

Wow that was a fast fix, thanks @bartlettroscoe ! Changes look reasonable

trilinos-autotester · 2023-06-15T03:23:30Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection Is Not Necessary for this Pull Request.

trilinos-autotester · 2023-06-15T03:28:58Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

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Using Repos:

Repo: TRILINOS (trilinos/Trilinos)

Pull Request Author: bartlettroscoe

trilinos-autotester · 2023-06-15T03:32:25Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

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CDash Test Results for PR# 11977.

Wiki: How to Reproduce PR Testing Builds and Errors.

ndellingwood · 2023-06-15T03:36:23Z

@bartlettroscoe I tested this with just an enable of Teuchos, but still seeing configuration errors when trying to configure from the packaged source:

-- The Current CXX Standard is : 17

Configuring Trilinos build directory

-- PROJECT_SOURCE_DIR='/Users/ndellin/Research/trilinos/trilinos-14.1-Source'
-- PROJECT_BINARY_DIR='/Users/ndellin/Research/trilinos/PR-11977-package-build'
-- Trilinos_TRIBITS_DIR='/Users/ndellin/Research/trilinos/trilinos-14.1-Source/cmake/tribits'
-- TriBITS_VERSION_STRING='0.9 (Dev)'
-- CMAKE_VERSION='3.24.4'
-- CMAKE_GENERATOR='Unix Makefiles'
-- CMAKE_HOST_SYSTEM_NAME='Darwin'
-- Trilinos_HOSTNAME='s1067110'
-- Found PythonInterp: /opt/local/bin/python (found suitable version "3.10.11", minimum required is "2.6") 
-- PYTHON_EXECUTABLE='/opt/local/bin/python'
-- Found Git: /opt/local/bin/git (found version "2.40.1") 

Setting up major user options ...


***
*** NOTE: Setting Trilinos_ENABLE_PyTrilinos=OFF because BUILD_SHARED_LIBS=OFF!
***

-- Setting Trilinos_ENABLE_TriKota=OFF because '/Users/ndellin/Research/trilinos/trilinos-14.1-Source/packages/TriKota/Dakota' does not exist!
-- Trilinos_GENERATE_REPO_VERSION_FILE='ON'

NOTE: Skipping generation of TrilinosRepoVersion.txt because project source is not a git repo!

Reading list of native TPLs from /Users/ndellin/Research/trilinos/trilinos-14.1-Source/TPLsList.cmake

-- After reading above TPLsList.cmake file: Trilinos_NUM_DEFINED_TPLS='122'

Reading list of native packages from /Users/ndellin/Research/trilinos/trilinos-14.1-Source/PackagesList.cmake


***
*** Error, the package TrilinosFrameworkTests directory /Users/ndellin/Research/trilinos/trilinos-14.1-Source/commonTools/framework does not exist!
***

CMake Error at cmake/tribits/core/package_arch/TribitsProcessPackagesAndDirsLists.cmake:562 (message):
  Stopping due to above error!
Call Stack (most recent call first):
  cmake/tribits/core/package_arch/TribitsReadAllProjectDepsFilesCreateDepsGraph.cmake:221 (tribits_process_packages_and_dirs_lists)
  cmake/tribits/core/package_arch/TribitsReadAllProjectDepsFilesCreateDepsGraph.cmake:77 (tribits_read_defined_external_and_internal_toplevel_packages_lists)
  cmake/tribits/core/package_arch/TribitsProjectImpl.cmake:154 (tribits_read_all_project_deps_files_create_deps_graph)
  cmake/tribits/core/package_arch/TribitsProject.cmake:92 (tribits_project_impl)
  CMakeLists.txt:126 (TRIBITS_PROJECT)


-- Configuring incomplete, errors occurred!

I reported as missing build_stats, but apparently there are multiple components from commonTools that are missing, build_stats just happened to be the first package in the list

bartlettroscoe · 2023-06-15T12:54:37Z

@ndellingwood, I was able to reproduce your failure and it is fixed by setting -D Trilinos_ASSERT_DEFINED_DEPENDENCIES=OFF as described in:

https://docs.trilinos.org/files/TrilinosBuildReference.html#creating-a-tarball-of-the-source-tree

which says:

NOTE: When configuring from an untarred source tree that has missing packages, one must configure with:
    -D Trilinos_ASSERT_DEFINED_DEPENDENCIES=OFF
Otherwise, TriBITS will error out complaining about missing packages. (Note that Trilinos_ASSERT_DEFINED_DEPENDENCIES will default to OFF in release mode, i.e. Trilinos_ENABLE_DEVELOPMENT_MODE==OFF.)

bartlettroscoe · 2023-06-15T12:57:52Z

FYI: No results showed up on CDash from the above PR testing iteration.

sebrowne · 2023-06-15T13:34:33Z

Running it again, there were issues with the backing service last night and we got no builds.

trilinos-autotester · 2023-06-15T17:30:05Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester · 2023-06-15T17:31:48Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

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Build Information

Test Name: Trilinos_PR_python3

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Status: STARTED

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TRILINOS_TARGET_SHA	`fba42ce`

Using Repos:

Repo: TRILINOS (trilinos/Trilinos)

Pull Request Author: bartlettroscoe

trilinos-autotester · 2023-06-15T21:05:14Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Build Num: 2377
Status: PASSED

Jenkins Parameters

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Build Information

Test Name: Trilinos_PR_clang-11.0.1

Build Num: 896
Status: PASSED

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Build Information

Test Name: Trilinos_PR_python3

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Build Information

Test Name: Trilinos_PR_cuda-11.4.2-uvm-off

Build Num: 1898
Status: FAILED

Jenkins Parameters

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Build Information

Test Name: Trilinos_PR_intel-2021.3

Build Num: 536
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TRILINOS_SOURCE_SHA	`40e37d9`
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TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`fba42ce`

CDash Test Results for PR# 11977.

Wiki: How to Reproduce PR Testing Builds and Errors.

bartlettroscoe · 2023-06-15T21:15:07Z

Shoot, one failing test in the PR iteration above blocked the merge of this PR 😢. The failing test was:

Intrepid2_unit-test_MonolithicExecutable_Intrepid2_Tests_MPI_1

in the build:

test-rhel7_sems-cuda-11.4.2-sems-gnu-10.1.0-sems-openmpi-4.0.5_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_no-uvm_deprecated-on_no-package-enables

showing:

Detailed test failure output for Intrepid2_unit-test_MonolithicExecutable_Intrepid2_Tests_MPI_1 (click to expand)

4. AnalyticPolynomialsMatch_Sacado_Fad_DFadType_Sacado_Fad_DFadType_HierarchicalNodalComparisons_UnitTest ... :0: : block: [865,0,0], thread: [0,95,0] Assertion `Allocation failed.` failed.
:0: : block: [963,0,0], thread: [0,127,0] Assertion `Allocation failed.` failed.
:0: : block: [975,0,0], thread: [0,95,0] Assertion `Allocation failed.` failed.
:0: : block: [867,0,0], thread: [0,63,0] Assertion `Allocation failed.` failed.
:0: : block: [962,0,0], thread: [0,63,0] Assertion `Allocation failed.` failed.
:0: : block: [864,0,0], thread: [0,31,0] Assertion `Allocation failed.` failed.
:0: : block: [910,0,0], thread: [0,95,0] Assertion `Allocation failed.` failed.
:0: : block: [886,0,0], thread: [0,31,0] Assertion `Allocation failed.` failed.
:0: : block: [885,0,0], thread: [0,127,0] Assertion `Allocation failed.` failed.
:0: : block: [832,0,0], thread: [0,31,0] Assertion `Allocation failed.` failed.
:0: : block: [958,0,0], thread: [0,31,0] Assertion `Allocation failed.` failed.
:0: : block: [863,0,0], thread: [0,63,0] Assertion `Allocation failed.` failed.
:0: : block: [866,0,0], thread: [0,63,0] Assertion `Allocation failed.` failed.
cudaStreamSynchronize(stream) error( cudaErrorAssert): device-side assert triggered ../Trilinos/packages/kokkos/core/src/Cuda/Kokkos_Cuda_Instance.cpp:144
Backtrace:
                       [0x25f13a5]
                       [0x25ea76a]
                       [0x25ea79b]
                       [0x25f7dd4]
                       [0x25f89d6]
                        [0x8da515]
                        [0x8da8a1]
                        [0x8db3bc]
                        [0x8e6a4d]
                        [0x9eb41e]
                        [0x9ec7d4]
                       [0x25c2484]
                       [0x25c58a9]
                       [0x25c99db]
                       [0x25ca563]
                        [0x69ce61]
__libc_start_main [0x7f8400812555]
                        [0x6a4d29]
[ascicgpu051:287514] *** Process received signal ***
[ascicgpu051:287514] Signal: Aborted (6)
[ascicgpu051:287514] Signal code:  (-6)

I will search on CDash to see if this failure is isolated or not before putting on AT: RETEST to re-run the PR builds.

bartlettroscoe · 2023-06-15T21:19:44Z

Looking at this query the above PR testing iteration seems to be the only time this test Intrepid2_unit-test_MonolithicExecutable_Intrepid2_Tests_MPI_1 has failed in this way in any PR builds so this might just be a random system issue (or a latent Trilinos bug; hard to tell).

I will put on AT: RETEST and I suspect this test will pass next time (and cross fingers that an unrelated failure does not occur).

Update:

As shown in this query, this is the only test failure in the last month showing errors like:

...
:0: : block: [963,0,0], thread: [0,127,0] Assertion `Allocation failed.` failed.
...
cudaStreamSynchronize(stream) error( cudaErrorAssert): device-side assert triggered ../Trilinos/packages/kokkos/core/src/Cuda/Kokkos_Cuda_Instance.cpp:144
...

So this might be a random system error (or could be a bug that only very rarely occurs).

trilinos-autotester · 2023-06-16T01:54:03Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester · 2023-06-16T01:55:54Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Build Num: 2381
Status: STARTED

Jenkins Parameters

Parameter Name	Value
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GENCONFIG_BUILD_NAME	rhel7_sems-gnu-8.3.0-openmpi-1.10.1-openmp_release-debug_static_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
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TRILINOS_SOURCE_SHA	`40e37d9`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
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Build Information

Test Name: Trilinos_PR_gcc-8.3.0-serial

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Jenkins Parameters

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Test Name: Trilinos_PR_gcc-8.3.0-debug

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Build Information

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Build Information

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Status: STARTED

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TRILINOS_TARGET_SHA	`fba42ce`

Using Repos:

Repo: TRILINOS (trilinos/Trilinos)

Pull Request Author: bartlettroscoe

trilinos-autotester · 2023-06-16T05:38:59Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Build Num: 2381
Status: PASSED

Jenkins Parameters

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PR_LABELS	AT: RETEST;AT: AUTOMERGE;TriBITS;PA: Framework
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PULLREQUEST_CDASH_TRACK	Pull Request
TEST_REPO_ALIAS	TRILINOS
TRILINOS_NODE_LABEL	trilinos-any
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Build Information

Test Name: Trilinos_PR_gcc-8.3.0-serial

Build Num: 909
Status: PASSED

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CDash Test Results for PR# 11977.

trilinos-autotester · 2023-06-16T05:39:19Z

Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ ndellingwood ]!

trilinos-autotester · 2023-06-16T05:39:29Z

Status Flag 'Pull Request AutoTester' - Pull Request will be Automerged

trilinos-autotester · 2023-06-16T05:39:32Z

Merge on Pull Request# 11977: IS A SUCCESS - Pull Request successfully merged

bartlettroscoe added 2 commits June 14, 2023 20:26

Make work with missing commonTools/build_stats (#11976)

7c630d7

This is also a TriBITS Trilinos package so if it is not enabled, then it gets excluded. I am not sure this is the right thing to do but for now, it fixes the immediate problem reported in #11976.

TriBITS: Temp fix for configuring from reduced tarball (#11976)

40e37d9

This is a temp fix the TriBITS that makes building from a reduced tarball work.

bartlettroscoe added TriBITS Issues with the TriBITS framework itself, not usage of the TriBITS framework PA: Framework Issues that fall under the Trilinos Framework Product Area labels Jun 15, 2023

bartlettroscoe requested a review from ndellingwood June 15, 2023 02:31

bartlettroscoe changed the title ~~11976 package source fix~~ Fix reduced tarball configuration (#11976) Jun 15, 2023

bartlettroscoe mentioned this pull request Jun 15, 2023

Tribits: make package_source creates tarballs with missing BuildStatsWrappers.cmake #11976

Closed

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ndellingwood approved these changes Jun 15, 2023

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sebrowne added the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Jun 15, 2023

bartlettroscoe added the AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed label Jun 15, 2023

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Jun 15, 2023

bartlettroscoe added the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Jun 15, 2023

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Jun 16, 2023

trilinos-autotester merged commit 8e95d51 into develop Jun 16, 2023

trilinos-autotester removed the AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed label Jun 16, 2023

bartlettroscoe mentioned this pull request Jul 13, 2023

Base CMakeLists.txt cleanup, reduced tarball testing, CI enable tweak, TriBITS update (#11545, #11976) #12044

Merged

ccober6 deleted the 11976-package_source-fix branch March 6, 2024 17:01

Fix reduced tarball configuration (#11976) #11977

Fix reduced tarball configuration (#11976) #11977

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Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_gcc-8.3.0-serial

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Build Information

Test Name: Trilinos_PR_gcc-8.3.0-debug

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Build Information

Test Name: Trilinos_PR_clang-11.0.1

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_python3

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_cuda-11.4.2-uvm-off

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Test Name: Trilinos_PR_intel-2021.3

Jenkins Parameters

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trilinos-autotester commented Jun 15, 2023

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

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Build Information

Test Name: Trilinos_PR_gcc-8.3.0-serial

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Build Information

Test Name: Trilinos_PR_gcc-8.3.0-debug

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Build Information

Test Name: Trilinos_PR_clang-11.0.1

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Build Information

Test Name: Trilinos_PR_python3

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Test Name: Trilinos_PR_cuda-11.4.2-uvm-off

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Test Name: Trilinos_PR_intel-2021.3

Jenkins Parameters

ndellingwood commented Jun 15, 2023

bartlettroscoe commented Jun 15, 2023

bartlettroscoe commented Jun 15, 2023

sebrowne commented Jun 15, 2023

trilinos-autotester commented Jun 15, 2023

trilinos-autotester commented Jun 15, 2023

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_gcc-8.3.0-serial

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Build Information

Test Name: Trilinos_PR_gcc-8.3.0-debug

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Build Information

Test Name: Trilinos_PR_clang-11.0.1

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Build Information

Test Name: Trilinos_PR_python3

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Build Information

Test Name: Trilinos_PR_cuda-11.4.2-uvm-off

Jenkins Parameters

Build Information

Test Name: Trilinos_PR_intel-2021.3

Jenkins Parameters

Using Repos:

bartlettroscoe commented Jun 15, 2023 •

edited

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