Nextflow pipeline for analysis of direct RNA Nanopore reads

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

NeoFlow: a proteogenomics pipeline for neoantigen discovery

A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

A proof of concept daisy-chaining Nextflow workflows

Nextflow pipeline for genome annotation of protein-coding genes

A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research

Sanger Cellular Genetics single-cell ATAC-seq pipeline.

Flujos de trabajos desarrollados y automatizados en el Inmegen para el procesamiento de datos genómicos y transcriptómicos.

Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow

A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).

Workflow for MAG quality assessment and taxonomical annotation.

Mbovpan is a nextflow bioinformatic pipeline for Mycobacterium bovis pangenome analysis. The goal of Mbovpan is to help researchers to study the M. bovis pangenome in an automatic and easy way.

A Nextflow pipeline to experiment with DSL2 + Zero Mess

Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.

Nextflow wrapper for the dragonflye assembler, with additional QC

A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)

Nextflow workflow for performing DIA proteomics

Nextflow pipeline to assemble genomes from long reads.