Skip to content
@BCCDC-PHL

BC Centre for Disease Control Public Health Laboratory

The BCCDC Public Health Laboratory is the primary public health and reference diagnostic testing facility for British Columbia.

Pinned Loading

  1. ncov2019-artic-nf ncov2019-artic-nf Public

    Forked from connor-lab/ncov2019-artic-nf

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    Nextflow 4 1

  2. illumina-uploader illumina-uploader Public

    Watch for new files in Illumina sequencer and upload to remote server

    Python 3 1

  3. mpxv-artic-nf mpxv-artic-nf Public

    Nextflow 2 4

  4. covid-qc covid-qc Public

    Static site for displaying COVID-19 sequencing quality control data

    Clojure 5

Repositories

Showing 10 of 123 repositories
  • auto-pangolin Public

    Automated lineage assignment of SARS-CoV-2 sequences with pangolin

    BCCDC-PHL/auto-pangolin’s past year of commit activity
    Python 0 0 0 0 Updated Apr 16, 2025
  • auto-ncov Public

    Automated genomic analysis of SARS-CoV-2 sequence data

    BCCDC-PHL/auto-ncov’s past year of commit activity
    Python 1 0 3 0 Updated Apr 16, 2025
  • ncov2019-artic-nf Public Forked from connor-lab/ncov2019-artic-nf

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    BCCDC-PHL/ncov2019-artic-nf’s past year of commit activity
    Nextflow 4 88 4 0 Updated Apr 16, 2025
  • auto-tb-amr-amplicon Public
    BCCDC-PHL/auto-tb-amr-amplicon’s past year of commit activity
    Python 0 0 0 0 Updated Apr 16, 2025
  • auto-cpo Public

    Automation of Genomic Analyses for Carbapenemase-Producing Organisms (CPOs)

    BCCDC-PHL/auto-cpo’s past year of commit activity
    Python 0 GPL-3.0 0 5 0 Updated Apr 16, 2025
  • auto-routine-sequence-qc Public
    BCCDC-PHL/auto-routine-sequence-qc’s past year of commit activity
    Python 0 0 0 0 Updated Apr 16, 2025
  • routine-sequence-qc Public

    Pipeline for running routine quality control analyses on illumina sequence data

    BCCDC-PHL/routine-sequence-qc’s past year of commit activity
    Python 1 3 8 0 Updated Apr 16, 2025
  • plasmid-assembly Public
    BCCDC-PHL/plasmid-assembly’s past year of commit activity
    Nextflow 0 MIT 0 3 1 Updated Apr 15, 2025
  • cluster-plasmids Public

    A workflow for assessing similarity between a set of plasmid sequences

    BCCDC-PHL/cluster-plasmids’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Apr 11, 2025
  • cpo-results-collector Public
    BCCDC-PHL/cpo-results-collector’s past year of commit activity
    Python 0 0 2 0 Updated Apr 9, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…