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Ldo scenarios #132
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Ldo scenarios #132
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857da4c
Create breaches.py
jcacosta89 52db86a
Create delete_scenarios.py
jcacosta89 6f464b8
Create upload_files_ldo.py
jcacosta89 a4f1dc8
Revert "Create upload_files_ldo.py"
jcacosta89 acc8e82
Update upload_files_ldo.py
jcacosta89 1ba91de
Update upload_files_ldo.py
jcacosta89 8c4f6f0
ruff format
wvangerwen 00033ac
add LDO_API and TODOs
wvangerwen bfc84f4
fix github tests
wvangerwen cf1883b
fix github test v2
wvangerwen 30347bc
fix github test v3
wvangerwen 0e4b855
fix github test v4
wvangerwen e2fa616
fix github test v5
wvangerwen ea01086
Update upload_files_ldo.py
jcacosta89 f09d4cc
Update upload_files_ldo.py
jcacosta89 5069865
Merge branch 'main' into ldo_scenarios
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# %% | ||
""" | ||
Each class has a file as its attributes and a file as a new class. | ||
self.base is the directory in which it is located | ||
""" | ||
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# First-party imports | ||
import os | ||
from pathlib import Path | ||
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from hhnk_research_tools import Folder | ||
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FOLDER_STRUCTURE = """ | ||
Main Breaches object | ||
├── 01_NetCDF | ||
│ ├── aggregate_results_3di.nc | ||
│ ├── gridadmin.h5 | ||
│ ├── gridadmin.sqlite | ||
│ └── results_3di.nc | ||
│ | ||
├── 02_JPEG | ||
│ ├── overstroming.png | ||
│ ├── breach.name.png | ||
│ └── agg.png | ||
├── 03_ssm | ||
│ ├── max_flow_velocity.tif | ||
│ └── max_raste_of_rise.tif | ||
│ └── max_waterdepth.tif | ||
│ └── max_waterlevel.tif | ||
└── 04_wss | ||
│ ├── dem_clip.vrt | ||
│ ├── grid_raw.gpkg | ||
│ ├── mask_flood.gpkg | ||
│ └── max_wdepth_orig.tif | ||
│ ├── new_grid.gpkg | ||
│ ├── nodeid.tif | ||
│ └── landuse_2021_clip.vrt | ||
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""" | ||
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class Breaches(Folder): | ||
__doc__ = f""" | ||
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-------------------------------------------------------------------------- | ||
An object to ease the accessibility, creation and checks of folders and | ||
files in the polder structure. | ||
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Usage as follows: | ||
- Access class with te path to the main folder (e.g., E:\03.resultaten\Overstromingsberekeningen primaire doorbraken 2024\output\ROR PRI - dijktrajecten 13-8 en 13-9 - Stroom_ZUID_T10_T3000\ROR-PRI-UITDAMMERDIJK_8-T100) | ||
- Find your way through by using folder.show | ||
- Check if a file or folder exists using .exists | ||
- Show all (needed) files using .files | ||
- Show all (needed) layers using .layers | ||
- Return a path of a file using either str() or .path | ||
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Example code: | ||
folder = Folders('E:\03.resultaten\Overstromingsberekeningen primaire doorbraken 2024\output\ROR PRI - dijktrajecten 13-8 en 13-9 - Stroom_ZUID_T10_T3000\ROR-PRI-UITDAMMERDIJK_8-T100') | ||
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folder.show | ||
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Output: | ||
Heiloo @ E:\03.resultaten\Overstromingsberekeningen primaire doorbraken 2024\output\ROR PRI - dijktrajecten 13-8 en 13-9 - Stroom_ZUID_T10_T3000\ROR-PRI-UITDAMMERDIJK_8-T100 | ||
Folders: | ||
Folders | ||
├── 01_NetCDF | ||
├── 02_JPEG | ||
├── 03_SSM | ||
└── 04_WSS | ||
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Files: [] | ||
Layers: [] | ||
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folder.source_data.show | ||
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Output: | ||
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01_Source_data @ C:/Poldermodellen/Heiloo/01_Source_data | ||
Folders: | ||
source_data | ||
└── modelbuilder | ||
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Files: ['aggregate_results_3di', 'gridadmin', 'results_3di', ...] | ||
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{FOLDER_STRUCTURE} | ||
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""" | ||
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def __init__(self, base, create=True): | ||
super().__init__(base, create=create) | ||
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# NetCDF | ||
self.netcdf = NetCDF(self.base, create=create) | ||
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# model files | ||
self.jpeg = JPEG(self.base, create=create) | ||
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# Threedi results | ||
self.ssm = SSM(self.base, create=create) | ||
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# Results of tests | ||
self.wss = WSS(self.base, create=create) | ||
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@property | ||
def structure(self): | ||
return f""" | ||
{self.space}Folders | ||
{self.space}├── 01_NetCDF (.netcdf) | ||
{self.space}├── 02_JPEG (.jpeg) | ||
{self.space}├── 03_SSM (.ssm) | ||
{self.space}└── 04_WSS (.wss) | ||
""" | ||
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@property | ||
def full_structure(self): | ||
return print(FOLDER_STRUCTURE) | ||
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def to_file_dict(self): | ||
""" | ||
Return dictionary containing paths to source files according to set project structure. | ||
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build_base_paths_dict( | ||
polder_path (string: path to project folder (highest level)) | ||
) | ||
""" | ||
return { | ||
"aggregate_results_3di": self.netcdf.aggregate_results_3di.path_if_exists, | ||
"gridadmin": self.netcdf.gridadmin.path_if_exists, | ||
"gridadmin": self.netcdf.gridadmin.path_if_exists, | ||
"results_3di": self.netcdf.results_3di.path_if_exists, | ||
# "channels_shapefile": self.source_data.modelbuilder.channel_from_profiles.path_if_exists, | ||
# jpeg | ||
"graph": self.jpeg.graph.path_if_exists, | ||
"agg_graph": self.jpeg.agg_graph.path_if_exists, | ||
"overstroming": self.jpeg.overstroming.path_if_exists, | ||
# wss | ||
"dem_clip": self.wss.dem_clip.path_if_exists, | ||
"grid_raw": self.wss.grid_raw.path_if_exists, | ||
"mask_flood": self.wss.mask_flood.path_if_exists, | ||
"max_wdepth_orig": self.wss.max_wdepth_orig.path_if_exists, | ||
"new_grid": self.wss.new_grid.path_if_exists, | ||
"nodeid": self.wss.nodeid.path_if_exists, | ||
"landuse_2021_clip": self.wss.landuse_2021_clip.path_if_exists, | ||
# ssm | ||
"max_flow_velocity_5m": self.ssm.max_flow_velocity_5m.path_if_exists, | ||
"max_rate_of_rise_5m": self.ssm.max_rate_of_rise_5m.sqlite_tests.path_if_exists, | ||
"max_waterdepth_5m": self.ssm.max_waterdepth_5m.path_if_exists, | ||
"max_waterlevel_5m": self.ssm.max_waterlevel_5m.path_if_exists, | ||
} | ||
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@classmethod | ||
def is_valid(self, folderpath): | ||
"""Check if folder stucture is available in input folder.""" | ||
SUB_FOLDERS = ["01_NetCDF", "02_JPEG", "03_SSM", "04_WSS"] | ||
return all([Path(folderpath).joinpath(i).exists() for i in SUB_FOLDERS]) | ||
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class NetCDF(Folder): | ||
"""Path to netcdf data (aggregate_results_3di, gridadmin, results_3di)""" | ||
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def __init__(self, base, create): | ||
super().__init__(os.path.join(base, "01_NetCDF"), create) | ||
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# Folders | ||
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if create: | ||
self.create_readme() | ||
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# Files | ||
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def create_readme(self): | ||
readme_txt = ( | ||
"Expected files are:\n\n" | ||
"aggregate_results_3di (*.nc) named 'aggregate_results_3di.nc'\n" | ||
"gridadmin (*.h5) named 'gridadmin.h5'\n" | ||
"gridadmin (*.sqlite) named 'gridadmin.sqlite'\n" | ||
"log_files (*..zip) named 'log_files.zip'\n" | ||
) | ||
with open(os.path.join(self.base, "read_me.txt"), mode="w") as f: | ||
f.write(readme_txt) | ||
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@property | ||
def structure(self): | ||
return f""" | ||
{self.space}01_NetCDF | ||
{self.space}└── aggregate_results_3di | ||
{self.space}└── gridadmin | ||
{self.space}└── results_3di | ||
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""" | ||
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class JPEG(Folder): | ||
"""Parent folder with all the images created for the final product. They included: | ||
breach graph and it aggregation, and also all the maps that can be generated. | ||
""" | ||
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def __init__(self, base, create): | ||
super().__init__(os.path.join(base, "02_JPEG"), create) | ||
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if create: | ||
self.create_readme() | ||
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def create_readme(self): | ||
readme_txt = ( | ||
"This folder is the default folder where the images and maps " | ||
"are stored. The inner structure of these result folders " | ||
"is automatically generated" | ||
) | ||
with open(os.path.join(self.base, "read_me.txt"), mode="w") as f: | ||
f.write(readme_txt) | ||
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def __repr__(self): | ||
return f"""{self.name} @ {self.base} | ||
Folders:\t{self.structure} | ||
Files:\t{list(self.files.keys())} | ||
""" | ||
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class SSM(Folder): | ||
""" | ||
Folder in which rasters from lizard can be saved | ||
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to use with list indexing use the following options: | ||
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""" | ||
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def __init__(self, base, create): | ||
super().__init__(os.path.join(base, "03_SSM"), create) | ||
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# Folders | ||
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if create: | ||
self.create_readme() | ||
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def create_readme(self): | ||
readme_txt = ( | ||
"Expected files are:tif files" | ||
"In this folder we are going to store the raster downloaded from lizard " | ||
"which include: max_flow_velocity, max_rate_rise, max_waterdepth, waterlelvel" | ||
) | ||
with open(os.path.join(self.base, "read_me.txt"), mode="w") as f: | ||
f.write(readme_txt) | ||
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# 1d2d output | ||
class WSS(Folder): | ||
""" | ||
Output paths are only defined up to the foldername | ||
of the test, because we can internally decide on the | ||
filenames of logfiles and generated layers (these | ||
paths are not up to the user) | ||
""" | ||
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def __init__(self, base, create): | ||
super().__init__(os.path.join(base, "04_WSS"), create) | ||
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if create: | ||
self.create_readme() | ||
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def create_readme(self): | ||
readme_txt = ( | ||
"This folder is the default folder where all the files to calculate the waterdepth raster including the waterdepth raster" | ||
"are stored. The inner structure of these result folders " | ||
"is automatically generated" | ||
) | ||
with open(os.path.join(self.base, "read_me.txt"), mode="w") as f: | ||
f.write(readme_txt) | ||
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# %% |
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# %% | ||
import pandas as pd | ||
import requests | ||
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# place the path of the metadata to be fill | ||
csv_location = pd.read_excel() | ||
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# Json function to be use in case there is a json file to read | ||
def extract_ids(json_data): | ||
ids = [] | ||
for item in json_data["items"]: | ||
if "id" in item: | ||
ids.append(item["id"]) | ||
return ids | ||
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# %% | ||
# Test API connection | ||
# Copy the hearders from the swagger website. | ||
health = "https://www.overstromingsinformatie.nl/auth/health/" | ||
headers = { | ||
"accept": "application/json", | ||
"content-type": "application/json", | ||
"X-CSRFToken": "29TVZT8M1YqAYO8xtU4jqeGYSA6zijTNarMpXLanXDacq0lGcrUsEESrEL17E79r", | ||
} | ||
response_health = requests.get(url=health, headers=headers) | ||
print(response_health.json()) | ||
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# %% | ||
well_know = "https://www.overstromingsinformatie.nl/auth/.well-known/jwks.json" | ||
well_know_response = requests.get(url=well_know, headers=headers) | ||
print(well_know_response.json()) | ||
# %% | ||
# FOR ADMINISTRATION PERMISION USE THE FOLLOWING. Otherwise you will get a permission feedback | ||
# at the moment you will try to upload the excel file. | ||
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parameters = { | ||
"scope": "admin", | ||
"name": "Juan_Test_12", | ||
"expiry_date": "2024-12-13T06:54:04.597Z", | ||
"revoked": False, | ||
} | ||
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# Copy here the API key generated on the website | ||
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api_key_10_07_24 = "lask2hq6.JhTTsbYLI0j5FNF20JQNpubBaYpByIx0" | ||
# %% | ||
# Check Tenants | ||
tenants = "Place here the API key" | ||
response_tenants = requests.get(url=tenants, headers=headers, auth=("__key__", api_key_10_07_24)) | ||
print(response_tenants.json()) | ||
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# %% | ||
# Get Token | ||
token_url = "https://www.overstromingsinformatie.nl/auth/v1/token/" | ||
response_5 = requests.post(url=token_url, json={"tenant": 4}, auth=("__key__", api_key_10_07_24)) | ||
print(response_5.json()) | ||
refresh = response_5.json()["refresh"] | ||
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# Get the TokenRefresh | ||
access = response_5.json() | ||
refresh_url = "https://www.overstromingsinformatie.nl/auth/v1/token/refresh/" | ||
data_refresh = {"refresh": response_5.json()["refresh"]} | ||
response_refresh = requests.post(url=refresh_url, json=data_refresh, auth=("__key__", api_key_10_07_24)) | ||
response_refresh = response_refresh.json() | ||
refresh_token = response_refresh["access"] | ||
print(response_refresh) | ||
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# Get ids to delete | ||
file_import_url = "https://www.overstromingsinformatie.nl/api/v1/scenarios?mode=private&limit=100&offset=0&order_by=id&status=incomplete" | ||
headers_excel = { | ||
"accept": "application/json", | ||
"authorization": f"Bearer {refresh_token}", | ||
# 'Content-type':'application/zip', | ||
} | ||
response_incomplete = requests.get(url=file_import_url, headers=headers_excel) | ||
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# Get json file from the link to be extracted | ||
# %% | ||
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# id_scenarios = extract_ids(response_incomplete.json()) | ||
id_scenarios = csv_location["id_delete"].values | ||
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# %% | ||
# id_scenarios = [] | ||
for id_scenario in id_scenarios: | ||
file_import_url = f"https://www.overstromingsinformatie.nl/api/v1/scenarios/{id_scenario}" | ||
# file_import_url = f'https://ldo.staging.lizard.net/api/v1/excel-imports/{id_excel}/files/{zip_name}/upload' | ||
headers_excel = { | ||
"accept": "application/json", | ||
"authorization": f"Bearer {refresh_token}", | ||
# 'Content-type':'application/zip', | ||
} | ||
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response = requests.delete(url=file_import_url, headers=headers_excel) | ||
print(file_import_url) | ||
# %% | ||
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# %% |
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Do you need this?
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I delete lines 116 and 117. With the previous function (lines 98 to 105) is more than enough