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stomach smooth muscle circular layer cell #2849

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1c9eedb
def ref
JABelfiore Dec 9, 2024
ab91f49
Merge branch 'master' into 2843-ntr-stomach-smooth-muscle-circular-la…
JABelfiore Dec 12, 2024
b81c655
Merge branch 'master' into 2843-ntr-stomach-smooth-muscle-circular-la…
JABelfiore Dec 16, 2024
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JABelfiore Dec 16, 2024
fdf33a9
merge import
JABelfiore Dec 20, 2024
10bc87f
Merge branch 'master' into 2843-ntr-stomach-smooth-muscle-circular-la…
JABelfiore Dec 20, 2024
fbc3d6b
uberon term imported
JABelfiore Jan 2, 2025
acf026b
Merge branch 'master' into 2843-ntr-stomach-smooth-muscle-circular-la…
JABelfiore Jan 7, 2025
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JABelfiore Feb 10, 2025
c7e91df
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JABelfiore Feb 10, 2025
becbb56
equiv class
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JABelfiore Feb 11, 2025
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JABelfiore Mar 7, 2025
d5e2f57
stomach smc equiv def
JABelfiore Mar 7, 2025
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14 changes: 11 additions & 3 deletions src/ontology/cl-edit.owl
Original file line number Diff line number Diff line change
Expand Up @@ -3114,6 +3114,7 @@ Declaration(Class(obo:CL_4047030))
Declaration(Class(obo:CL_4047032))
Declaration(Class(obo:CL_4047034))
Declaration(Class(obo:CL_4047035))
Declaration(Class(obo:CL_4047036))
Declaration(Class(obo:CL_4047037))
Declaration(Class(obo:CL_4047038))
Declaration(Class(obo:CL_4047040))
Expand Down Expand Up @@ -3307,6 +3308,7 @@ Declaration(Class(obo:UBERON_0006841))
Declaration(Class(obo:UBERON_0008198))
Declaration(Class(obo:UBERON_0008304))
Declaration(Class(obo:UBERON_0008305))
Declaration(Class(obo:UBERON_0008857))
Declaration(Class(obo:UBERON_0008862))
Declaration(Class(obo:UBERON_0009738))
Declaration(Class(obo:UBERON_0009739))
Expand Down Expand Up @@ -33159,9 +33161,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:21443757") Annotation(ob
AnnotationAssertion(terms:contributor obo:CL_4047034 <https://orcid.org/0009-0005-7919-4905>)
AnnotationAssertion(terms:date obo:CL_4047034 "2024-12-05T11:10:18Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:CL_4047034 "smooth muscle cell of stomach"@en)
SubClassOf(obo:CL_4047034 obo:CL_0000192)
SubClassOf(obo:CL_4047034 ObjectSomeValuesFrom(obo:BFO_0000050 obo:CL_4047034))
SubClassOf(obo:CL_4047034 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008856))
EquivalentClasses(obo:CL_4047034 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008856)))

# Class: obo:CL_4047035 (stomach smooth muscle outer longitudinal layer cell)

Expand All @@ -33171,6 +33171,14 @@ AnnotationAssertion(terms:date obo:CL_4047035 "2024-12-05T16:13:49Z"^^xsd:dateTi
AnnotationAssertion(rdfs:label obo:CL_4047035 "stomach smooth muscle outer longitudinal layer cell"@en)
SubClassOf(obo:CL_4047035 obo:CL_4047034)

# Class: obo:CL_4047036 (stomach smooth muscle circular layer cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:11146428") Annotation(oboInOwl:hasDbXref "PMID:32424507") obo:IAO_0000115 obo:CL_4047036 "A smooth muscle cell located in the middle layer of the muscularis externa of the stomach wall. This cell is arranged concentrically with the stomach's longitudinal axis, forming a continuous sheet of contractile tissue. It is fusiform in shape, containing actin and myosin filaments that enable contraction without striations. This cell contributes to the mechanical digestion and movement of food within the stomach through coordinated contractions, and plays a role in forming the pyloric sphincter in the pyloric region.")
AnnotationAssertion(terms:contributor obo:CL_4047036 <https://orcid.org/0009-0005-7919-4905>)
AnnotationAssertion(terms:date obo:CL_4047036 "2024-12-09T10:40:58Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:CL_4047036 "stomach smooth muscle circular layer cell"@en)
EquivalentClasses(obo:CL_4047036 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008857)))

# Class: obo:CL_4047037 (stomach smooth muscle inner oblique layer cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29493959") obo:IAO_0000115 obo:CL_4047037 "A smooth muscle cell found in the innermost layer of the muscularis externa of the stomach wall. This cell forms a unique layer of smooth muscle fibers oriented obliquely to the stomach's longitudinal axis. It is responsible for aiding in the mixing and churning of gastric contents, contributing to mechanical digestion within the stomach.")
Expand Down
2 changes: 1 addition & 1 deletion src/patterns/pattern.owl
Original file line number Diff line number Diff line change
Expand Up @@ -88,7 +88,7 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/cl/taxonSpecific>
EquivalentClasses(<http://purl.obolibrary.org/obo/cl/taxonSpecific> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CL_0000000> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002162> <http://purl.obolibrary.org/obo/NCBITaxon_1>)))


AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "xsd:string"^^xsd:string) <http://purl.org/dc/terms/description> <http://purl.obolibrary.org/obo/cl/ExtendedDescription> "xsd:string
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "xsd:string"^^xsd:string) <http://purl.org/dc/terms/description> <http://purl.obolibrary.org/obo/cl/ExtendedDescription> "This extended description was generated by ChatGPT and reviewed by the CellGuide team, who added references, and by the CL editors, who approved it for inclusion in CL. It may contain information that applies only to some subtypes and species, and so should not be considered definitional.

(This extended description was generated by ChatGPT and reviewed by the CellGuide team, who added references, and by the CL editors, who approved it for inclusion in CL. It may contain information that applies only to some subtypes and species, and so should not be considered definitional.)"^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/title> <http://purl.obolibrary.org/obo/cl/ExtendedDescription> "ExtendedDescription"^^xsd:string)
Expand Down