stomach smooth muscle circular layer cell

[JABelfiore]

def and refs added

[dosumis]

Looks good, just needs EC def.

[dosumis]

Make EquivalentClass Def (smooth muscle and part_of some 'stomach smooth muscle circular layer')

[dosumis]

We also need a general grouping term for circular layer smooth muscle cell. Could be added in another PR or here.

[dosumis]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-03-07/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-03-07/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

UBERON_0008856 http://purl.obolibrary.org/obo/UBERON_0008856

Added

• Class: UBERON_0008856

UBERON_0008857 http://purl.obolibrary.org/obo/UBERON_0008857

Added

• Class: UBERON_0008857

smooth muscle cell of stomach http://purl.obolibrary.org/obo/CL_4047034

Removed

• smooth muscle cell of stomach SubClassOf BFO_0000050 some smooth muscle cell of stomach

Added

• smooth muscle cell of stomach EquivalentTo smooth muscle cell and (BFO_0000050 some UBERON_0008856)

• smooth muscle cell of stomach SubClassOf BFO_0000050 some UBERON_0008856

stomach smooth muscle circular layer cell http://purl.obolibrary.org/obo/CL_4047036

Added

• stomach smooth muscle circular layer cell IAO_0000115 "A smooth muscle cell located in the middle layer of the muscularis externa of the stomach wall. This cell is arranged concentrically with the stomach's longitudinal axis, forming a continuous sheet of contractile tissue. It is fusiform in shape, containing actin and myosin filaments that enable contraction without striations. This cell contributes to the mechanical digestion and movement of food within the stomach through coordinated contractions, and plays a role in forming the pyloric sphincter in the pyloric region."

  • hasDbXref "PMID:32424507"

  • hasDbXref "PMID:11146428"

• stomach smooth muscle circular layer cell contributor 0009-0005-7919-4905

• stomach smooth muscle circular layer cell label "stomach smooth muscle circular layer cell"@en

• stomach smooth muscle circular layer cell date "2024-12-09T10:40:58Z"^^dateTime

• Class: stomach smooth muscle circular layer cell

• stomach smooth muscle circular layer cell EquivalentTo smooth muscle cell and (BFO_0000050 some UBERON_0008857)

• stomach smooth muscle circular layer cell SubClassOf BFO_0000050 some UBERON_0008857

• stomach smooth muscle circular layer cell SubClassOf smooth muscle cell of stomach

stomach smooth muscle inner oblique layer cell http://purl.obolibrary.org/obo/CL_4047037

Removed

• stomach smooth muscle inner oblique layer cell SubClassOf smooth muscle cell

Added

• stomach smooth muscle inner oblique layer cell SubClassOf smooth muscle cell of stomach

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl-edit.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl-edit.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

smooth muscle cell of stomach http://purl.obolibrary.org/obo/CL_4047034

Removed

• smooth muscle cell of stomach SubClassOf part of some stomach muscularis externa

• smooth muscle cell of stomach SubClassOf smooth muscle cell

• smooth muscle cell of stomach SubClassOf part of some smooth muscle cell of stomach

Added

• smooth muscle cell of stomach EquivalentTo smooth muscle cell and (part of some stomach muscularis externa)

stomach smooth muscle circular layer http://purl.obolibrary.org/obo/UBERON_0008857

Added

• Class: stomach smooth muscle circular layer

stomach smooth muscle circular layer cell http://purl.obolibrary.org/obo/CL_4047036

Added

• stomach smooth muscle circular layer cell definition "A smooth muscle cell located in the middle layer of the muscularis externa of the stomach wall. This cell is arranged concentrically with the stomach's longitudinal axis, forming a continuous sheet of contractile tissue. It is fusiform in shape, containing actin and myosin filaments that enable contraction without striations. This cell contributes to the mechanical digestion and movement of food within the stomach through coordinated contractions, and plays a role in forming the pyloric sphincter in the pyloric region."

  • database_cross_reference "PMID:32424507"

  • database_cross_reference "PMID:11146428"

• stomach smooth muscle circular layer cell contributor 0009-0005-7919-4905

• stomach smooth muscle circular layer cell label "stomach smooth muscle circular layer cell"@en

• stomach smooth muscle circular layer cell date "2024-12-09T10:40:58Z"^^dateTime

• Class: stomach smooth muscle circular layer cell

• stomach smooth muscle circular layer cell EquivalentTo smooth muscle cell and (part of some stomach smooth muscle circular layer)

[JABelfiore]

#gogoeditdiff