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Pull requests: nf-core/modules

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Pull requests list

bump samshee
#8316 opened Apr 15, 2025 by atrigila Loading…
17 tasks
2
Migrate iphop/download to nf-test nf-test
#8315 opened Apr 15, 2025 by LouisLeNezet Loading…
17 tasks
1
@LouisLeNezet
longstitch module, tests
#8312 opened Apr 15, 2025 by nschan Loading…
6
Bump modkit to 0.4.4
#8311 opened Apr 15, 2025 by fellen31 Loading…
17 tasks
1
Bump hifiasm to 0.25.0
#8309 opened Apr 15, 2025 by fellen31 Loading…
17 tasks
Bump TRGT to 2.0.0
#8308 opened Apr 15, 2025 by fellen31 Loading…
17 tasks
wildcard expansion in vsearch bug fix
#8307 opened Apr 15, 2025 by tom-brekke Loading…
2 tasks done
1
Bump Severus to 1.5
#8306 opened Apr 15, 2025 by fellen31 Loading…
17 tasks
3
fasta_index scope for run_picard_collecthsmetrics
#8304 opened Apr 15, 2025 by dcarrillox Loading…
17 tasks
port purecn/run to nf-test
#8303 opened Apr 15, 2025 by famosab Loading…
17 tasks
1
8
Replaced params.use_gpu with a workflow variable
#8302 opened Apr 15, 2025 by GallVp Loading…
1 of 17 tasks
1
srst2/srst2 to nf-test
#8301 opened Apr 14, 2025 by famosab Loading…
17 tasks
1
2
jupyternotebook to nf-test
#8300 opened Apr 14, 2025 by famosab Loading…
17 tasks
1
2
Added module picard MeanQualityByCycle
#8289 opened Apr 14, 2025 by mikefeixu Loading…
17 tasks done
Added module picard CollectAlignmentSummaryMetrics
#8287 opened Apr 13, 2025 by mikefeixu Loading…
17 tasks done
Add eider modules new module Adding a new module WIP Work in progress
#8284 opened Apr 11, 2025 by heuermh • Draft
14 of 17 tasks
1
Bump PureCN for all relevant modules (#8264)
#8272 opened Apr 11, 2025 by lbeltrame Loading…
7 of 16 tasks
1
@lbeltrame
3
SENTIEON_BWAMEM license path
#8256 opened Apr 9, 2025 by edmundmiller • Draft
@edmundmiller
Use pre-commit in fix-linting action
#8250 opened Apr 8, 2025 by mashehu Loading…
Earlgrey module WIP
#8249 opened Apr 8, 2025 by cintiaoi Loading…
10 of 17 tasks
fix: nf-test in strelka Ready for Review
#8241 opened Apr 8, 2025 by famosab Loading…
1 of 17 tasks
1
5
feat: add literal string to make contrasts in variancepartition/dream
#8231 opened Apr 7, 2025 by atrigila Loading…
17 tasks
7
Update modules meta-schema.json
#8226 opened Apr 7, 2025 by mirpedrol Loading…
Add new module called rundbcan and subcommands(database, cazymeannotation, easycgc, easysubstrate)
#8216 opened Apr 4, 2025 by Xinpeng021001 Loading…
12 of 17 tasks
18
adds ClairSTO
#8214 opened Apr 4, 2025 by robert-a-forsyth Loading…
12 of 17 tasks
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