Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Preseq testing #112

Merged
merged 14 commits into from
Jan 15, 2021
Merged

Preseq testing #112

merged 14 commits into from
Jan 15, 2021

Conversation

sruthipsuresh
Copy link
Contributor

Added testing for preseq, both paired and single end. I also added a -bam argument to the original module to ensure that the input is run as a bam file by the preseq tool.
Closes #99
@emiller88

@edmundmiller edmundmiller self-requested a review January 14, 2021 17:25
@edmundmiller edmundmiller added this to the Test All the Modules milestone Jan 14, 2021
@edmundmiller edmundmiller added the tests Related to automated tests label Jan 14, 2021
Copy link
Member

@drpatelh drpatelh left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM! Minor change.

software/preseq/lcextrap/main.nf Outdated Show resolved Hide resolved
Co-authored-by: Harshil Patel <[email protected]>
@edmundmiller edmundmiller merged commit daa25b9 into nf-core:master Jan 15, 2021
@sruthipsuresh sruthipsuresh deleted the preseq_test branch March 22, 2021 17:45
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
tests Related to automated tests
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Add tests for preseq
3 participants