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FIX: custom/dumpsoftwareversions #215

Merged
merged 3 commits into from
Oct 12, 2023
Merged

FIX: custom/dumpsoftwareversions #215

merged 3 commits into from
Oct 12, 2023

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maxulysse
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@maxulysse
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It should only run customdumpsoftwareversion tests

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github-actions bot commented Oct 12, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 92e7588

+| ✅ 134 tests passed       |+
#| ❔  18 tests were ignored |#
!| ❗   1 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

  • files_exist - File is ignored: .github/workflows/awsfulltest.yml
  • files_exist - File is ignored: .github/workflows/awstest.yml
  • files_exist - File is ignored: assets/multiqc_config.yml
  • files_exist - File is ignored: conf/igenomes.config
  • files_exist - File is ignored: conf/modules.config
  • files_exist - File is ignored: lib/NfcoreTemplate.groovy
  • files_exist - File is ignored: lib/Utils.groovy
  • files_exist - File is ignored: lib/WorkflowFetchngs.groovy
  • files_exist - File is ignored: lib/WorkflowMain.groovy
  • files_exist - File is ignored: lib/nfcore_external_java_deps.jar
  • files_unchanged - File ignored due to lint config: .gitattributes
  • files_unchanged - File ignored due to lint config: assets/sendmail_template.txt
  • files_unchanged - File does not exist: lib/nfcore_external_java_deps.jar
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy
  • files_unchanged - File ignored due to lint config: .gitignore or .prettierignore or pyproject.toml
  • actions_ci - actions_ci
  • actions_awstest - 'awstest.yml' workflow not found: /home/runner/work/fetchngs/fetchngs/.github/workflows/awstest.yml
  • multiqc_config - 'assets/multiqc_config.yml' not found

✅ Tests passed:

Run details

  • nf-core/tools version 2.10
  • Run at 2023-10-12 13:49:09

@maxulysse
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we won't be able to reproduce that test in a pipeline, due to the fact that in a pipeline custom/dumpsoftwareversions is also reporting some info from the nextflow.config manifest

@maxulysse maxulysse merged commit 884565c into nf-core:refactor Oct 12, 2023
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@maxulysse