R Scripts, Jupyter Notebooks, Conda Environments for Jacob et al. 2023 Dev Cell
Additional material is available on Zenodo (https://doi.org/10.5281/zenodo.7805311).
This includes:
- Input files required for running the notebooks (incl. expression matrices, loom files, metadata, etc.)
- H5ad files containing the relevant output of the All/FIB/EPI notebooks
- UMAP coordinates
- Cluster assignment for all cells included in the final analysis
Raw data, expression matrices, and metadata is available via ArrayExpress (E-MTAB-11920).