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Jacob_Env2.yml
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name: scvelo
channels:
- bioconda
- free
- main
- r
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_llvm
- _tflow_select=2.3.0=mkl
- abseil-cpp=20200923.3=h2531618_0
- absl-py=0.13.0=py38h06a4308_0
- adjusttext=0.7.3.1=py_1
- aiohttp=3.7.4.post0=py38h497a2fe_0
- alabaster=0.7.12=pyhd3eb1b0_0
- alsa-lib=1.2.3=h516909a_0
- anndata=0.7.6=py38h578d9bd_0
- appdirs=1.4.4=pyh9f0ad1d_0
- argon2-cffi=20.1.0=py38h497a2fe_2
- arpack=3.7.0=hdefa2d7_2
- astor=0.8.1=py38_0
- astunparse=1.6.3=pyhd8ed1ab_0
- async-timeout=3.0.1=py38_0
- async_generator=1.10=pyhd3eb1b0_0
- attrs=21.2.0=pyhd8ed1ab_0
- babel=2.9.1=pyhd3eb1b0_0
- backcall=0.2.0=pyhd3eb1b0_0
- backports=1.0=pyhd3eb1b0_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- backports.zoneinfo=0.2.1=py38h497a2fe_3
- bbknn=1.5.1=py38h4a8c8d9_1
- blas=2.111=openblas
- blas-devel=3.9.0=11_linux64_openblas
- bleach=4.0.0=pyhd8ed1ab_0
- blinker=1.4=py38_0
- blosc=1.21.0=h9c3ff4c_0
- brotli=1.0.9=h7f98852_5
- brotli-bin=1.0.9=h7f98852_5
- brotlipy=0.7.0=py38h27cfd23_1003
- brunsli=0.1=he1b5a44_0
- bzip2=1.0.8=h7f98852_4
- c-ares=1.17.2=h7f98852_0
- ca-certificates=2021.10.8=ha878542_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cachetools=4.2.2=pyhd8ed1ab_0
- cellrank=1.5.1=pyhdfd78af_0
- cellrank-krylov=1.5.1=pyh1e54042_0
- certifi=2021.10.8=py38h578d9bd_2
- cffi=1.14.6=py38ha65f79e_0
- cfitsio=3.470=hb418390_7
- chardet=4.0.0=py38h06a4308_1003
- charls=2.2.0=h2531618_0
- charset-normalizer=2.0.0=pyhd8ed1ab_0
- click=8.0.1=py38h578d9bd_0
- cloudpickle=1.6.0=py_0
- colorama=0.4.4=pyhd3eb1b0_0
- cryptography=3.4.7=py38hd23ed53_0
- cycler=0.10.0=py38_0
- cytoolz=0.11.0=py38h497a2fe_3
- dask-core=2021.8.0=pyhd8ed1ab_0
- dataclasses=0.8=pyh6d0b6a4_7
- dbus=1.13.18=hb2f20db_0
- dca=0.3.2=py_0
- debugpy=1.4.1=py38h709712a_0
- decorator=5.0.9=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- deprecated=1.2.12=pyhd3eb1b0_0
- docrep=0.3.2=pyh44b312d_0
- docutils=0.17.1=py38h06a4308_1
- dunamai=1.6.0=pyhd8ed1ab_0
- entrypoints=0.3=py38h32f6830_1002
- expat=2.4.1=h2531618_2
- fa2=0.3.5=py38h1e0a361_0
- fbpca=1.0=py_0
- fftw=3.3.10=mpi_openmpi_hde5b206_1
- flatbuffers=2.0.0=h2531618_0
- fontconfig=2.13.1=hba837de_1005
- freetype=2.10.4=h0708190_1
- fsspec=2021.7.0=pyhd8ed1ab_0
- future=0.18.2=py38h578d9bd_3
- future_fstrings=1.2.0=py38h32f6830_2
- gast=0.4.0=pyhd3eb1b0_0
- geosketch=1.2=py_0
- get_version=3.5=pyhd8ed1ab_0
- gettext=0.21.0=hf68c758_0
- giflib=5.2.1=h516909a_2
- glib=2.68.4=h9c3ff4c_0
- glib-tools=2.68.4=h9c3ff4c_0
- glpk=4.65=h9202a9a_1004
- gmp=6.2.1=h2531618_2
- google-auth=1.35.0=pyh6c4a22f_0
- google-auth-oauthlib=0.4.1=py_2
- google-pasta=0.2.0=pyh8c360ce_0
- graphtools=1.5.2=py_0
- grpcio=1.38.1=py38hdd6454d_0
- gst-plugins-base=1.18.4=hf529b03_2
- gstreamer=1.18.4=h76c114f_2
- h5py=3.6.0=nompi_py38hfbb2109_100
- harmonypy=0.0.5=py_0
- hdf5=1.12.1=nompi_h2750804_103
- hyperopt=0.2.5=pyh9f0ad1d_0
- hypre=2.23.0=mpi_openmpi_h3e9f1a4_0
- icu=68.1=h2531618_0
- idna=3.2=pyhd3eb1b0_0
- igraph=0.9.4=ha184e22_0
- imagecodecs=2021.7.30=py38hb5ce8f7_0
- imageio=2.9.0=pyhd3eb1b0_0
- imagesize=1.2.0=pyhd3eb1b0_0
- importlib-metadata=4.6.4=py38h578d9bd_0
- importlib_metadata=4.6.4=hd8ed1ab_0
- intel-openmp=2021.3.0=h06a4308_3350
- intervaltree=2.1.0=py_1
- ipykernel=6.2.0=py38he5a9106_0
- ipython=7.26.0=py38he5a9106_0
- ipython_genutils=0.2.0=pyhd3eb1b0_1
- ipywidgets=7.6.3=pyhd3eb1b0_1
- jbig=2.1=h7f98852_2003
- jedi=0.18.0=py38h578d9bd_2
- jinja2=3.0.1=pyhd8ed1ab_0
- joblib=1.0.1=pyhd8ed1ab_0
- jpeg=9d=h516909a_0
- jsonschema=3.2.0=pyhd8ed1ab_3
- jupyter=1.0.0=py38_7
- jupyter_client=6.1.12=pyhd8ed1ab_0
- jupyter_console=6.4.0=pyhd8ed1ab_0
- jupyter_contrib_core=0.3.3=py_2
- jupyter_contrib_nbextensions=0.5.1=py38h32f6830_1
- jupyter_core=4.7.1=py38h578d9bd_0
- jupyter_highlight_selected_word=0.2.0=py38h578d9bd_1002
- jupyter_latex_envs=1.4.6=py38h578d9bd_1001
- jupyter_nbextensions_configurator=0.4.1=py38h578d9bd_2
- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
- jupyterlab_widgets=1.0.0=pyhd8ed1ab_1
- jxrlib=1.1=h516909a_2
- keras=2.4.3=0
- keras-base=2.4.3=py_0
- keras-preprocessing=1.1.2=pyhd8ed1ab_0
- kiwisolver=1.3.1=py38h1fd1430_1
- kopt=0.1.0=pyh145b6a8_2
- krb5=1.19.2=hcc1bbae_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- legacy-api-wrap=1.2=py_0
- leidenalg=0.8.7=py38h709712a_0
- lerc=2.2.1=h2531618_0
- libaec=1.0.5=h9c3ff4c_0
- libblas=3.9.0=11_linux64_openblas
- libbrotlicommon=1.0.9=h7f98852_5
- libbrotlidec=1.0.9=h7f98852_5
- libbrotlienc=1.0.9=h7f98852_5
- libcblas=3.9.0=11_linux64_openblas
- libclang=11.1.0=default_ha53f305_1
- libcurl=7.81.0=h2574ce0_0
- libdeflate=1.8=h7f8727e_5
- libedit=3.1.20210216=h27cfd23_1
- libev=4.33=h516909a_1
- libevent=2.1.10=hcdb4288_3
- libffi=3.3=he6710b0_2
- libgcc-ng=11.1.0=hc902ee8_8
- libgfortran-ng=11.1.0=h69a702a_8
- libgfortran5=11.1.0=h6c583b3_8
- libglib=2.68.4=h3e27bee_0
- libgomp=11.1.0=hc902ee8_8
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=11_linux64_openblas
- liblapacke=3.9.0=11_linux64_openblas
- libllvm10=10.0.1=hbcb73fb_5
- libllvm11=11.1.0=hf817b99_2
- libnghttp2=1.43.0=h812cca2_0
- libogg=1.3.5=h27cfd23_1
- libopenblas=0.3.17=pthreads_h8fe5266_1
- libopus=1.3.1=h7f98852_1
- libpng=1.6.37=hed695b0_2
- libpq=13.3=hd57d9b9_0
- libprotobuf=3.14.0=h780b84a_0
- libsodium=1.0.18=h516909a_1
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-ng=11.1.0=h56837e0_8
- libtiff=4.3.0=hf544144_0
- libuuid=2.32.1=h14c3975_1000
- libvorbis=1.3.7=he1b5a44_0
- libwebp-base=1.2.1=h7f98852_0
- libxcb=1.14=h7b6447c_0
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.9.12=h72842e0_0
- libxslt=1.1.33=h15afd5d_2
- libzlib=1.2.11=h36c2ea0_1013
- libzopfli=1.0.3=he6710b0_0
- llvm-openmp=12.0.1=h4bd325d_1
- llvmlite=0.38.0=py38h4630a5e_0
- locket=0.2.1=py38h06a4308_1
- loompy=3.0.6=py_0
- lxml=4.6.3=py38hf1fe3a4_0
- lz4-c=1.9.3=h295c915_1
- lzo=2.10=h516909a_1000
- markdown=3.3.4=py38h06a4308_0
- markupsafe=2.0.1=py38h497a2fe_0
- matplotlib=3.4.3=py38h578d9bd_0
- matplotlib-base=3.4.3=py38hf4fb855_0
- matplotlib-inline=0.1.2=pyhd8ed1ab_2
- metis=5.1.0=he1b5a44_1006
- mistune=0.8.4=py38h497a2fe_1004
- mkl=2021.3.0=h06a4308_520
- mkl-service=2.4.0=py38h497a2fe_0
- mnnpy=0.1.9.5=py38h4a8c8d9_2
- mock=4.0.3=py38h578d9bd_1
- mpfr=4.1.0=h9202a9a_0
- mpi=1.0=openmpi
- mpi4py=3.1.1=py38h3e8e7aa_0
- multidict=5.1.0=py38h27cfd23_2
- mumps-include=5.2.1=ha770c72_10
- mumps-mpi=5.2.1=h4f59553_10
- mysql-common=8.0.25=ha770c72_2
- mysql-libs=8.0.25=hfa10184_2
- natsort=7.1.1=pyhd8ed1ab_0
- nbclient=0.5.4=pyhd8ed1ab_0
- nbconvert=6.1.0=py38h578d9bd_0
- nbformat=5.1.3=pyhd8ed1ab_0
- ncurses=6.2=h58526e2_4
- nest-asyncio=1.5.1=pyhd8ed1ab_0
- networkx=2.6.2=pyhd3eb1b0_0
- notebook=6.4.3=py38h06a4308_0
- nspr=4.30=h9c3ff4c_0
- nss=3.69=hb5efdd6_0
- numba=0.55.0=py38h4bf6c61_0
- numexpr=2.8.1=py38hecfb737_0
- numpy=1.21.2=py38he2449b9_0
- numpy_groupies=0.9.13=pyh9f0ad1d_1
- oauthlib=3.1.1=pyhd8ed1ab_0
- olefile=0.46=pyh9f0ad1d_1
- openblas=0.3.17=pthreads_h4748800_1
- openjpeg=2.4.0=hb52868f_1
- openmpi=4.1.1=hbfc84c5_0
- openssl=1.1.1n=h166bdaf_0
- opt_einsum=3.3.0=pyhd8ed1ab_1
- packaging=21.0=pyhd8ed1ab_0
- pandas=1.3.2=py38h43a58ef_0
- pandoc=2.14.1=h7f98852_0
- pandocfilters=1.4.3=py38h06a4308_1
- parmetis=4.0.3=he9a3056_1005
- parso=0.8.2=pyhd8ed1ab_0
- partd=1.2.0=pyhd8ed1ab_0
- patsy=0.5.1=py38_0
- pcre=8.45=h295c915_0
- petsc=3.16.1=real_ha79c5e3_101
- petsc4py=3.16.1=real_h66562c8_100
- pexpect=4.8.0=pyhd3eb1b0_3
- phate=1.0.7=py_0
- pickleshare=0.7.5=py38h32f6830_1002
- pillow=8.3.1=py38h8e6f84c_0
- pip=21.2.4=pyhd8ed1ab_0
- pooch=1.4.0=pyhd8ed1ab_0
- pot=0.7.0=py38h950e882_0
- progressbar2=3.53.1=pyh9f0ad1d_0
- prometheus_client=0.11.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.19=pyha770c72_0
- prompt_toolkit=3.0.19=hd8ed1ab_0
- protobuf=3.14.0=py38h2531618_1
- ptscotch=6.0.9=hedbc1fb_1
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.8=py_0
- pycparser=2.20=pyh9f0ad1d_2
- pygam=0.8.0=py_0
- pygments=2.10.0=pyhd8ed1ab_0
- pygpcca=1.0.2=py38h578d9bd_0
- pygsp=0.5.1=py_0
- pyjwt=2.1.0=py38h06a4308_0
- pymongo=3.12.0=py38h709712a_0
- pynndescent=0.5.4=pyhd3eb1b0_0
- pyopenssl=20.0.1=pyhd3eb1b0_1
- pyparsing=2.4.7=pyhd3eb1b0_0
- pyqt=5.12.3=py38h578d9bd_7
- pyqt-impl=5.12.3=py38h7400c14_7
- pyqt5-sip=4.19.18=py38h709712a_7
- pyqtchart=5.12=py38h7400c14_7
- pyqtwebengine=5.12.1=py38h7400c14_7
- pyrsistent=0.17.3=py38h497a2fe_2
- pysocks=1.7.1=py38h578d9bd_3
- pytables=3.6.1=py38hdb04529_5
- python=3.8.10=h12debd9_8
- python-annoy=1.17.0=py38h709712a_2
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-flatbuffers=1.12=pyhd8ed1ab_1
- python-igraph=0.9.1=py38h2af5540_0
- python-utils=2.5.6=py38h06a4308_0
- python_abi=3.8=2_cp38
- pytz=2021.1=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pywavelets=1.1.1=py38hab2c0dc_3
- pyyaml=5.4.1=py38h497a2fe_1
- pyzmq=22.2.1=py38h295c915_1
- qt=5.12.9=hda022c4_4
- qtconsole=5.1.1=pyhd8ed1ab_0
- qtpy=1.10.0=pyhd8ed1ab_0
- readline=8.1=h46c0cb4_0
- requests=2.26.0=pyhd8ed1ab_0
- requests-oauthlib=1.3.0=pyh9f0ad1d_0
- rsa=4.7.2=pyhd3eb1b0_1
- s_gd2=1.7=py38hbf85e49_2
- scalapack=2.0.2=hc7fdd6d_1009
- scanorama=1.7.1=py_0
- scanpy=1.8.2=pyhd8ed1ab_0
- scikit-image=0.18.2=py38h1abd341_0
- scikit-learn=0.24.2=py38h1561384_1
- scipy=1.7.1=py38h56a6a73_0
- scotch=6.0.9=he1efa8a_1
- scprep=1.1.0=py_0
- scrublet=0.2.3=pyh5e36f6f_1
- scvelo=0.2.4=pyhdfd78af_0
- seaborn=0.11.2=pyhd3eb1b0_0
- send2trash=1.8.0=pyhd8ed1ab_0
- setuptools=57.4.0=py38h578d9bd_0
- sinfo=0.3.1=py_0
- six=1.16.0=pyhd3eb1b0_0
- slepc=3.16.1=real_h6e7ff00_100
- slepc4py=3.16.1=real_h9aab128_100
- snappy=1.1.8=he1b5a44_3
- snowballstemmer=2.1.0=pyhd8ed1ab_0
- sortedcontainers=2.4.0=pyhd8ed1ab_0
- sphinx=4.1.2=pyh6c4a22f_1
- sphinxcontrib-applehelp=1.0.2=pyhd3eb1b0_0
- sphinxcontrib-devhelp=1.0.2=pyhd3eb1b0_0
- sphinxcontrib-htmlhelp=2.0.0=pyhd8ed1ab_0
- sphinxcontrib-jsmath=1.0.1=pyhd3eb1b0_0
- sphinxcontrib-qthelp=1.0.3=pyhd3eb1b0_0
- sphinxcontrib-serializinghtml=1.1.5=pyhd8ed1ab_0
- sqlite=3.36.0=hc218d9a_0
- statsmodels=0.12.2=py38h27cfd23_0
- stdlib-list=0.7.0=py_2
- suitesparse=5.10.1=h9e50725_1
- superlu=5.2.2=he1ec49c_0
- superlu_dist=7.1.1=h34f6f4d_1
- tasklogger=1.1.0=pyhd8ed1ab_0
- tbb=2021.5.0=h4bd325d_0
- tensorboard=2.5.0=pyhd8ed1ab_0
- tensorboard-data-server=0.6.0=py38h2b97feb_0
- tensorboard-plugin-wit=1.8.0=pyh44b312d_0
- tensorflow=2.5.0=mkl_py38hce4fbe1_0
- tensorflow-base=2.5.0=mkl_py38h35b2a3d_0
- tensorflow-estimator=2.5.0=pyh81a9013_1
- termcolor=1.1.0=py38_1
- terminado=0.11.1=py38h578d9bd_0
- testpath=0.5.0=pyhd8ed1ab_0
- texttable=1.6.4=pyhd8ed1ab_0
- threadpoolctl=2.2.0=pyhbf3da8f_0
- tifffile=2021.7.2=pyhd3eb1b0_2
- tk=8.6.10=hed695b0_1
- tokenize-rt=4.1.0=pyhd8ed1ab_0
- toolz=0.11.1=pyhd3eb1b0_0
- tornado=6.1=py38h497a2fe_1
- tqdm=4.62.1=pyhd3eb1b0_1
- traitlets=5.0.5=pyhd3eb1b0_0
- typing-extensions=3.10.0.0=hd8ed1ab_0
- typing_extensions=3.10.0.0=pyha770c72_0
- tzdata=2021a=he74cb21_1
- tzlocal=3.0=py38h578d9bd_1
- umap-learn=0.5.1=py38h578d9bd_1
- urllib3=1.26.6=pyhd3eb1b0_1
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py38_1
- werkzeug=2.0.1=pyhd8ed1ab_0
- wheel=0.35.1=pyhd3eb1b0_0
- widgetsnbextension=3.5.1=py38h578d9bd_4
- wrapt=1.12.1=py38h497a2fe_3
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h516909a_0
- yarl=1.6.3=py38h497a2fe_2
- zeromq=4.3.4=h2531618_0
- zfp=0.5.5=h2531618_6
- zipp=3.5.0=pyhd8ed1ab_0
- zlib=1.2.11=h36c2ea0_1013
- zstd=1.5.0=ha95c52a_0
- pip:
- wot==1.0.8.post3.dev8+gca5e94f
- xlrd==1.2.0
prefix: /home/user/anaconda3/envs/scvelo