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dataSetDetails
Table of Contents
This page is under construction, and is part of MoBa Genetics 1.5. However, we will include information information that is relevant for release 1.0 as well.
The details here are typical reference details for the raw-data available to you: Individual samples lacking, known weaknesses etc.
These are data-sets that existed in version 1.0. Keep in mind that file-names and structure has changed slightly between 1.0 and 1.5: We here use the 1.5 terms.
The set was a part of the set called Harvest in v1.0. In the V1.0 subset of plink files, they were called m12good (snp001) and m12bad(snp002) . The naming was unfortuate since noen of the sets are better than the other: They were just callibrated differently despite shareing the same chip Illumina Human Core Exome12 v1.1
The idats files for snp001 have the following samples that should be mentioned
- There are two hapmap samples 9965536008_R02C02 and 9965557019_R02C01 . These are tagget with Sample_Group Hapmap in the samplesheet sampleSheet_mb001_HumanCoreExome12v11a.csv . Plate/well information is unknown for these.
- 9481136038_R02C01 could not be genotyped and can therefore not be found in the corresponding bedset mb001_HumanCoreExome12a
The set was a part of the set called Harvest in v1.0. These were genotyped on Illumina Human Core Exome 24 v1.0 chip
Empty for now