{lang}[foss/2023a] R-bundle-CRAN v2023.12 #19170

SebastianAchilles · 2023-11-07T16:12:33Z

(created using eb --new-pr)

Depends on:

~~R/4.3.1 {lang}[gfbf/2023a] R v4.3.1 #18221~~
R/4.3.2 {lang}[gfbf/2023a] R v4.3.2 #19185
PostgreSQL/16.1 {data}[GCCcore/12.3.0] PostgreSQL v16.1 #19175

…HWxtest-1.1.9_add-fcommon.patch, liquidSVM-1.2.4-fix_ppc_and_aarch64_build.patch

SebastianAchilles · 2023-11-07T20:23:11Z

Test report by @SebastianAchilles
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
bwd-rockylinux-92 - Linux Rocky Linux 9.2 (Blue Onyx), x86_64, Intel(R) Core(TM) i7-6900K CPU @ 3.20GHz (broadwell), Python 3.9.16
See https://gist.github.com/SebastianAchilles/ba8152a227748e6103d5f0299b897094 for a full test report.

SebastianAchilles · 2023-11-08T12:16:26Z

Test report by @SebastianAchilles
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
bwd-rockylinux-92 - Linux Rocky Linux 9.2 (Blue Onyx), x86_64, Intel(R) Core(TM) i7-6900K CPU @ 3.20GHz (broadwell), Python 3.9.16
See https://gist.github.com/SebastianAchilles/1f175208b1d0d8f3c3bb8a643c0d52d9 for a full test report.

SebastianAchilles · 2023-11-08T13:37:52Z

Test report by @SebastianAchilles
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bwd-rockylinux-92 - Linux Rocky Linux 9.2 (Blue Onyx), x86_64, Intel(R) Core(TM) i7-6900K CPU @ 3.20GHz (broadwell), Python 3.9.16
See https://gist.github.com/SebastianAchilles/49fd1e824963937e8301ec781c4b3982 for a full test report.

SebastianAchilles · 2023-11-10T09:52:55Z

@boegelbot please test @ jsc-zen2

boegelbot · 2023-11-10T09:55:08Z

@SebastianAchilles: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=19170 EB_ARGS= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_19170 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 3701

Test results coming soon (I hope)...

- notification for comment with ID 1805420726 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

SebastianAchilles · 2023-11-10T11:21:07Z

@boegelbot please test @ generoso

boegelbot · 2023-11-10T11:25:08Z

@SebastianAchilles: Request for testing this PR well received on login1

PR test command 'EB_PR=19170 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_19170 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 12129

Test results coming soon (I hope)...

- notification for comment with ID 1805542282 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-11-10T15:16:50Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/boegelbot/0823c1f2ce8621b79c515bed562c136d for a full test report.

boegelbot · 2023-11-10T18:08:36Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/d77889c37770a8cb5bc3fb532cd8d291 for a full test report.

jfgrimm · 2023-11-24T11:52:43Z

Test report by @jfgrimm
FAILED
Build succeeded for 60 out of 70 (1 easyconfigs in total)
node040.viking2.yor.alces.network - Linux Rocky Linux 8.8, x86_64, AMD EPYC 7643 48-Core Processor, Python 3.6.8
See https://gist.github.com/jfgrimm/303db5d2ce6dec58d73a89050d91ba47 for a full test report.

edit: ran into that Rust issue

…asyconfigs into 20231107171228_new_pr_R-bundle-CRAN202311

…023.11-foss-2023a.eb

…a.eb

lexming · 2023-12-11T00:05:53Z

@SebastianAchilles since this PR is more than one month old, I took the liberty of updating the list of the extensions with latest available versions in CRAN. Tests incoming...

lexming · 2023-12-11T00:10:23Z

@boegelbot please test @ jsc-zen2

boegelbot · 2023-12-11T00:15:08Z

@lexming: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=19170 EB_ARGS= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_19170 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 3874

Test results coming soon (I hope)...

- notification for comment with ID 1849139254 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-12-11T05:28:36Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/boegelbot/fa6d927bc7cc2040a2ce92cea904d730 for a full test report.

lexming · 2023-12-11T07:36:35Z

Test report by @lexming
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node311.hydra.os - Linux Rocky Linux 8.8, x86_64, Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/lexming/8d57387cc6080f0f1b5413cfc9aae715 for a full test report.

lexming · 2023-12-11T13:33:28Z

@boegelbot: please test @ generoso

boegelbot · 2023-12-11T13:35:08Z

@lexming: Request for testing this PR well received on login1

PR test command 'EB_PR=19170 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_19170 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 12367

Test results coming soon (I hope)...

- notification for comment with ID 1850088842 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-12-11T20:02:21Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns2 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/7fe42c4c898b6fcc316129a755b43039 for a full test report.

lexming · 2023-12-11T20:28:53Z

Test report by @lexming
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node200.hydra.os - Linux Rocky Linux 8.8, x86_64, Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz (broadwell), Python 3.6.8
See https://gist.github.com/lexming/994fc318fb155bb47312051e990567dd for a full test report.

lexming

LGTM

lexming · 2023-12-11T21:35:38Z

@SebastianAchilles this is ready on my side, are you happy with it?

SebastianAchilles · 2023-12-12T13:34:11Z

@lexming Thanks for updating the list of the extensions with latest available versions in CRAN. This looks good to me 👍

We could consider updating the version of the easyconfig to 2023.12 to match the extension update.

…oss-2023a.eb

lexming · 2023-12-12T14:51:57Z

@SebastianAchilles good point, renamed the easyconfig in 08655b6. Going in as soon as the unit tests are over, thanks!

lexming

LGTM (again)

adding easyconfigs: R-bundle-CRAN-2023.11-foss-2023a.eb and patches: …

5fa0641

…HWxtest-1.1.9_add-fcommon.patch, liquidSVM-1.2.4-fix_ppc_and_aarch64_build.patch

SebastianAchilles added the new label Nov 7, 2023

SebastianAchilles marked this pull request as draft November 7, 2023 16:13

SebastianAchilles added this to the 4.x milestone Nov 7, 2023

SebastianAchilles added the 2023a label Nov 7, 2023

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update OpenMx in R-bundle-CRAN 2023.11

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update R-bundle-CRAN 2023.11

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SebastianAchilles marked this pull request as ready for review November 9, 2023 12:31

update PostgreSQL dependency to 16.1

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lexming added 4 commits December 10, 2023 00:41

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

91232d0

…asyconfigs into 20231107171228_new_pr_R-bundle-CRAN202311

remove deps already present in base R easyconfig from R-bundle-CRAN-2…

49cc58e

…023.11-foss-2023a.eb

fix code formatting in R-bundle-CRAN-2023.11-foss-2023a.eb

64ab317

10th december update of extensions in R-bundle-CRAN-2023.11-foss-2023…

1884c46

…a.eb

easybuilders deleted a comment from boegelbot Dec 11, 2023

lexming previously approved these changes Dec 11, 2023

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SebastianAchilles mentioned this pull request Dec 12, 2023

{lang}[gfbf/2023a] R v4.3.2 #19185

Merged

Rename R-bundle-CRAN-2023.11-foss-2023a.eb to R-bundle-CRAN-2023.12-f…

08655b6

…oss-2023a.eb

lexming dismissed their stale review via 08655b6 December 12, 2023 14:49

lexming changed the title ~~{lang}[foss/2023a] R-bundle-CRAN v2023.11~~ {lang}[foss/2023a] R-bundle-CRAN v2023.12 Dec 12, 2023

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lexming enabled auto-merge December 12, 2023 14:52

fix version of R-bundle-CRAN-2023.12-foss-2023a.eb

a6f0290

lexming dismissed their stale review via a6f0290 December 12, 2023 15:05

lexming approved these changes Dec 12, 2023

View reviewed changes

lexming merged commit da36e3b into easybuilders:develop Dec 12, 2023
9 checks passed

boegel modified the milestones: 4.x, next release (4.9.0) Dec 30, 2023

boegel mentioned this pull request Jan 2, 2024

{lang}[foss/2023a] R v4.3.1 #18808

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{lang}[foss/2023a] R-bundle-CRAN v2023.12 #19170

{lang}[foss/2023a] R-bundle-CRAN v2023.12 #19170

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{lang}[foss/2023a] R-bundle-CRAN v2023.12 #19170

{lang}[foss/2023a] R-bundle-CRAN v2023.12 #19170

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