v1.0.1

What's Changed

• Update viralflow by @dezordi in #41
• Update viralflow (#42) by @dezordi in #43
• fix bamdash to deal with BAM file with no mapped reads by @alexandrefreitasdasilva in #45

Full Changelog: v1.0.0...v1.0.1

v1.0.0

What's Changed

• Vfnext docs by @dezordi in #28
• fix compileOutput.py script to run on viralflow env by @alexandrefreitasdasilva in #29
• Develop fix nextflow metrics by @alexandrefreitasdasilva in #30
• fix splitting of R1 and R2 unmapped reads by @alexandrefreitasdasilva in #31
• Fix intrahost script by @alexandrefreitasdasilva in #32
• Implementation of coveragePlot module by @alexandrefreitasdasilva in #33
• solving fixWGS to run on viralflow env by @alexandrefreitasdasilva in #37
• Develop update containers by @costahud in #39
• release of ViralFlow version 1.0.0 by @alexandrefreitasdasilva in #40

New Contributors

• @costahud made their first contribution in #39

Full Changelog: v0.1.0...v1.0.0

v0.1.0

What's Changed

• Vfnext by @AMarinhoSN in #27

Major changes

• Code refactoring to nextflow
• Allow analysis of custom viruses (non-segmented)
• New metrics evaluation with picard
• Addition of SNPEff
• Improvement of PCR primers trimming

Full Changelog: 0.0.7...v0.1.0

v0.0.7

final release of the old ViralFlow python based code

v.0.0.6

CLI and new features