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Develop #757

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merged 11 commits into from
Oct 1, 2021
Merged

Develop #757

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9847b81
Fixing hicPCA: Lieberman-Aidens correct method is to compute obs/exp …
joachimwolff Sep 30, 2021
11be029
Updating the version number
joachimwolff Sep 30, 2021
b83ab6e
Adding for hicInfo the option to call the version number via -v too
joachimwolff Sep 30, 2021
f34f9c5
Merge branch 'pca_rolf' into develop
joachimwolff Sep 30, 2021
336dc20
Fixing a bug for the TAD location validation
joachimwolff Sep 30, 2021
898f75d
Adding new test data for hicValidateLocations
joachimwolff Sep 30, 2021
4faf6d8
Fixing a bug in hicHypterOpt caused by new CLI interface of hicValida…
joachimwolff Sep 30, 2021
1b72489
Adding documentation about native HiCExplorer file formats
joachimwolff Sep 30, 2021
f1fad59
Adding chi-c documentation and information on how to read / write h5 …
joachimwolff Oct 1, 2021
c30d274
Adding information concerning the latest releases
joachimwolff Oct 1, 2021
672930c
Set the correct version number
joachimwolff Oct 1, 2021
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21 changes: 21 additions & 0 deletions docs/content/News.rst
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Expand Up @@ -2,6 +2,27 @@ News and Developments
=====================


Release 3.7.2
-------------
**1 October 2021**

- Fixing a bug in hicHyperoptDetectLoops concerning the validation of the loop locations
- Fixing a bug in hicValidateLocations concerning the computation of TADs
- Adding the -v option for the version for hicInfo
- Adding documentation concerning the native file formats of HiCExplorer
- Fixing the way A/B compartments are computed based on Lieberman-Aiden 2009. The intermediate Pearson matrix is not used anymore.

Release 3.7.1
-------------
**9 August 2021**

The promised functions for the strand information in 3.7 were not part of the release due to confusion in merging multiple branches. Therefore they are now included in the 3.7.1 release:

- hicAggregateContacts: Option to consider the strand orientation (#633)
- hicAverageRegions: Option to consider the strand orientation (#633)

Additionally, a small bug fix in hicInfo concerning the correct sum of the interaction matrix.

Release 3.7
-----------
**27 July 2021**
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