Code

Develop#757

Code

Merged

joachimwolff merged 11 commits intomasterdeeptools/HiCExplorer:masterfrom developdeeptools/HiCExplorer:developCopy head branch name to clipboardOct 1, 2021

+21,918-20,999

Commits

Commits on Sep 30, 2021

• Fixing hicPCA: Lieberman-Aidens correct method is to compute obs/exp and pca, not the pca on a pearson matrix. Making pearson matrix optional.

  joachimwolff

  committed
  9847b81

  Copy full SHA for 9847b81

• Updating the version number

  joachimwolff

  committed
  11be029

  Copy full SHA for 11be029

• Adding for hicInfo the option to call the version number via -v too

  joachimwolff

  committed
  b83ab6e

  Copy full SHA for b83ab6e

• Merge branch 'pca_rolf' into develop

  joachimwolff

  committed
  f34f9c5

  Copy full SHA for f34f9c5

• Fixing a bug for the TAD location validation

  joachimwolff

  committed
  336dc20

  Copy full SHA for 336dc20

• Adding new test data for hicValidateLocations

  joachimwolff

  committed
  898f75d

  Copy full SHA for 898f75d

• Fixing a bug in hicHypterOpt caused by new CLI interface of hicValidateLocations. Linting

  joachimwolff

  committed
  4faf6d8

  Copy full SHA for 4faf6d8

• Adding documentation about native HiCExplorer file formats

  joachimwolff

  committed
  1b72489

  Copy full SHA for 1b72489

Commits on Oct 1, 2021

• Adding chi-c documentation and information on how to read / write h5 files via HiCMatrix

  joachimwolff

  committed
  f1fad59

  Copy full SHA for f1fad59

• Adding information concerning the latest releases

  joachimwolff

  committed
  c30d274

  Copy full SHA for c30d274

• Set the correct version number

  joachimwolff

  committed
  672930c

  Copy full SHA for 672930c