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bump everything #1778

Merged
merged 39 commits into from
Apr 23, 2024
Merged

bump everything #1778

merged 39 commits into from
Apr 23, 2024

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casperdcl
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@casperdcl casperdcl commented Apr 16, 2024 •
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merged all of the following into one branch:

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Checklist

  • I have performed a self-review of my code
  • I have added docstrings in line with the guidance in the developer guide
  • I have updated the relevant documentation
  • I have implemented unit tests that cover any new or modified functionality
  • CHANGELOG.md has been updated with any functionality change
  • Request review from all relevant developers
  • Change pull request label to 'Waiting for review'

Contribution Notes

Please read and adhere to the developer guide and local patterns and conventions.

  • The content of this Pull Request (the Contribution) is intentionally submitted for inclusion in CIL (the Work) under the terms and conditions of the Apache-2.0 License
  • I confirm that the contribution does not violate any intellectual property rights of third parties

gfardell and others added 30 commits February 16, 2024 17:11
@gfardell
Update cil recipes to use astra 2.1
86d3df4
@gfardell
callback temp fix
b13e7f6
@casperdcl
tests: fix windows tempfile race
79734b9
@gfardell
Merge remote-tracking branch 'upstream/master' into astra_2.1
52ab891
@gfardell
Merge remote-tracking branch 'upstream/test-windows-tempfile-race' in…
63cdc2c 
…to astra_2.1
@gfardell
changelog
f7602ee
@gfardell
Merge branch 'master' into astra_2.1
a092968
@gfardell
change back to conda-forge with cuda
7a29e25
@gfardell
update readme
20dcb83
@gfardell
Merge branch 'master' into astra_2.1
60b02e1 
Signed-off-by: Gemma Fardell <[email protected]>
@gfardell
Updated Dockerfile for new ASTRA version
a660e40
@gfardell
Updated requirements to TIGRE 2.6
c598a04
@gfardell
update recipe
03ffdeb
@gfardell
Update unittests for py3.12
223adbd
@gfardell
Merge branch 'master' into tigre_2.6
f1fce47
@gfardell
replace assertDictContainsSubset
f71918b
@gfardell
Merge branch 'master' into tigre_2.6
66b90b5
@gfardell
Update meta.yaml
45872b0 
and `__cuda` selector
@gfardell
Update meta.yaml
cf25d33 
added astra packages for GPU and non-CPU systems. Loosened version constraints in optional dependencies.
@casperdcl
CI: drop CUDA ASTRA
6287110
@casperdcl
CI: drop TIGRE CPU
e0a68ab
@casperdcl
docker: try -c nvidia
e7e8a13
@paskino @casperdcl
updates for CCPi-Regularisation version 24.0.0
7f95463
@paskino @casperdcl
add to changelog
bdc55dd
@casperdcl
bump ccpi-regulariser
fdc7a54
@casperdcl
CI: bump python, numpy versions
eb3649f
@gfardell
Supress prints for 3D fdk calls
2547db0
@gfardell
add versions, remove selector
e06231a
@gfardell
Merge remote-tracking branch 'origin/py_np_variants_update' into rgl24
3dc669a
@casperdcl
Merge branch 'astra_2.1' into bump-versions
14305b1
@casperdcl casperdcl changed the title octo-merge bump everything Apr 16, 2024
@gfardell
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Passing! I Need to confirm builds with conda-build on linux & windows before we merge.

@casperdcl
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Did you fix TIGRE? I didn't see a PR.

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casperdcl commented Apr 19, 2024 •
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Oh I see TomographicImaging/TIGRE-conda@0141368 directly pushed to master

@gfardell
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Yeah, I build and upload manually so I uploaded them to test and then pushed after :)

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Everything worked for me on windows and Linux! So I think we can merge and tag.

gfardell added 2 commits April 19, 2024 13:40
@gfardell
Update README.md
788cbc3 
Signed-off-by: Gemma Fardell <[email protected]>
@gfardell
Update cange log
9dee8c2 
Signed-off-by: Gemma Fardell <[email protected]>
lauramurgatroyd
lauramurgatroyd reviewed Apr 19, 2024
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I looked at the documentation artifact, in the 1778_merge folder.
Is this the correct part to check?

I saw the tigre documentation was not rendered correctly there.

image

I am about to push a PR with some minor changes to changlelog and a readme

.github/workflows/build.yml
python-version: [3.9]
numpy-version: [1.22]
python-version: [3.11]
numpy-version: [1.25]
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why were these particular versions chosen for the conda action?

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Sorry I realise my above screenshot didnt properly demonstrate it but basically none of the tigre plugin was rendered

paskino
paskino reviewed Apr 19, 2024
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recipe/meta.yaml
- astra-toolbox>=1.9.9.dev5,<2.1
- tigre=2.4
- ccpi-regulariser=22.0.0
- astra-toolbox>=1.9.9.dev5,<=2.1
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are we happy with a range of ASTRA versions or do we want to pin to 2.1 only?

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There's no interface changes between the two so I think it's ok. Backend changes are the user's responsibility.

paskino
paskino reviewed Apr 19, 2024
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recipe/meta.yaml
- tigre=2.4
- ccpi-regulariser=22.0.0
- astra-toolbox>=1.9.9.dev5,<=2.1
- tigre>=2.4,<=2.6
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Do we accept a range of versions for TIGRE too?

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There's no interface changes between the two so I think it's ok. Backend changes are the user's responsibility.

@paskino paskino mentioned this pull request Apr 22, 2024
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@gfardell
Update test_DataProcessor.py
8f91c0e 
force jenkins

Signed-off-by: Gemma Fardell <[email protected]>
paskino
paskino reviewed Apr 23, 2024
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README.md
- `tomophantom` can generate phantoms to use as test data [Tomophantom](https://github.com/dkazanc/TomoPhantom)
- `ipywidgets` enables visulisation tools within jupyter noteboooks
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I wonder, shouldn't we need a table with versions requirements in the README?

@gfardell gfardell merged commit 5117e82 into master Apr 23, 2024
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@gfardell gfardell deleted the bump-versions branch April 23, 2024 09:05
@paskino paskino mentioned this pull request Apr 23, 2024
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@gfardell gfardell mentioned this pull request Apr 23, 2024
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@casperdcl casperdcl mentioned this pull request Apr 24, 2024
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