Release 98

[gustavo-salazar]

All the changes that were already reviewed in:

• Ipscan batch download #547
• Representative domains for interproscan results #548
• Consistent categories #549
• Removing the genome3d subpage from an entry page #550
• TS migration for Domain Architectures #551
• IDA download JSON and TSV #553
• New description structure #554
• TS IDA search #557
• Contact us page #558
• Fix EntryOnStructure popup #559
• Npm update #560
• Gene in protein list and summary #561
• Ts migrations for Menu #562

Note 1: Requires to be installed with npm7+ and node 18+
Note 2: Some features require the latest API changes in this PR
Note 3: Currently deployed in the future environment and should get automatically deployed in dev overnight

[coveralls]

coverage: 23.713% (+0.1%) from 23.594%
when pulling ea281fe on dev
into 02e21a1 on master.

[typhainepl]

Impressive work! Overall everything seems to work fine. The only style issue I spotted is that on the Export menu, the Visual framework-styled buttons go outside the allocated area.
Example:

Something I noticed is that when deleting one of the sequences in the batch search and downloading through the Group actions, the sequence is still there. But I am not sure this is fixable.

One thing to work on for the next release will be to have the gene available in TSV and Fasta files.

[gustavo-salazar]

@typhainepl I think by introducing that bug I should get one of these mugs:

[matthiasblum]

LGTM.

A bunch of minor styling suggestions (non related to the PR):

• Do not uppercase tooltip's titles in Tooltip/style.css.
• Add an !important after text-decoration rules in interpro-vf.css.
• Remove card-specific link styles as they clash with the new VF styles (e.g. bottom border and underline on hover)
• Add .protvista-menu { margin-top: 0; } to Table/Exporter/style.css to align the Export button with other components in the Browse page's table or grid.

[gustavo-salazar]

A bunch of minor styling suggestions

I just include those changes. However, I only removed the border thing underlining the card titles. I'll review more about it whenever I do the migration to TS for those.

[typhainepl]

I just came across an issue with the relationship between entries in the clan Overview, the links between the nodes aren't shown anymore and the nodes are spaced equally from each other (e.g. cl00011)

[gustavo-salazar]

I just came across an issue with the relationship between entries in the clan Overview, the links between the nodes aren't shown anymore and the nodes are spaced equally from each other (e.g. cl00011)

It's a data problem. But I think that test databases are being refreshed because of the upcoming release.