v2.6.0 release announcement

[cmdcolin]

changelog thus far. we can do some testing to see that the rootmodel and related refactors are stable and then move for a new release :)
$ lerna-changelog

Unreleased (2023-06-08)

🚀 Enhancement

• Other
  • #3743 Create mixin for shared code between LinearWiggleDisplay and MultiWiggleLinearDisplay (@cmdcolin)
  • #3711 Allow synteny data adapters to open files larger than 512Mb (@cmdcolin)
  • #3639 Add button to bookmark in jbrowse-web share dialog (@cmdcolin)
  • #3631 Add BEDPE add track workflow, avoid showing "Add track" when disabled (@carolinebridge-oicr)
  • #3700 Render alignment track arcs instantly after bpPerPx change (@cmdcolin)
  • #3697 Re-introduce the render delay for alignments track arc displays (@cmdcolin)
  • #3695 Reduce re-drawing on alignments track paired read arcs/cloud display types (@cmdcolin)
• core
  • #3725 Filter tracks that match all view.assemblyNames in multi-assembly track selector modes (@cmdcolin)
  • #3531 Add @jbrowse/react-app embedded component (@cmdcolin)
  • #3653 Evaluate extension point on track config pre-process snapshot (@cmdcolin)
  • #3706 Miscellaneous alignments arc/cloud fixes (@cmdcolin)
  • #3698 Add column resizers to the variant ANN/CSQ panels (@cmdcolin)
• app-core, product-core, web-core
  • #3531 Add @jbrowse/react-app embedded component (@cmdcolin)
• __mocks__
  • #3707 Improved read cloud display for long reads with inversions (@cmdcolin)

🐛 Bug Fix

• core
  • #3749 Avoid re-prompting a user login when refresh token is processed (@cmdcolin)
  • #3572 Add OAuth and HTTP BasicAuth servers for local testing, fix some OAuth flows (@garrettjstevens)
  • #3708 Add removable-media to jbrowse desktop snap (@cmdcolin)
  • #3687 Take into account ML tag when showing MM tag on alignments, misc refactoring (@cmdcolin)
• Other
  • #3747 Fix blank lines in GFF crashing text-index (@cmdcolin)
  • #3739 Fix specifying the assemblyNames config slot on add-connection CLI (@cmdcolin)
  • #3631 Add BEDPE add track workflow, avoid showing "Add track" when disabled (@carolinebridge-oicr)
  • #3667 Fix horizontal flip functionality for Hi-C display (@studentshivang)
  • #3703 Fix rendering error in alignments tracks when filtering by tag in CRAM file (@Lilas-w)
  • #3694 Fix ability to filter certain fields in BAM/CRAM files (@cmdcolin)
  • #3691 Fix breakpoint split view alignment connections not pointing at right position in v2.5.0 (@cmdcolin)
  • #3686 Fix jbrowse create/jbrowse upgrade CLI intermittent failures (@cmdcolin)
• product-core, web-core
  • #3738 Don't throw on UCSC connection containing assemblies not matching connection->assemblyNames config (@cmdcolin)
• app-core, core, embedded-core
  • #3731 Fix view menu going off screen in some cases (@cmdcolin)
• app-core
  • #3713 Fix centering of the ImportForm on SV inspector (@cmdcolin)

📝 Documentation

• Other
  • #3732 Add JBrowse R shiny app demo (@carolinebridge-oicr)
  • #3693 Remove package table from release blogposts (@cmdcolin)
• core, embedded-core, product-core
  • #3704 Organize autogenerated docs into categories (@cmdcolin)

🏠 Internal

• app-core, core, product-core, text-indexing
  • #3740 Bump electron, proxy-agent, fontsource-roboto, etc. and update SnackbarMessage from typed array to object (@cmdcolin)
• core
  • #3741 Distinguish between SessionWithConnections and SessionWithConnectionEditing (@cmdcolin)
• Other
  • #3734 PileupRenderer refactor (@cmdcolin)
• app-core, core, product-core, web-core
  • #3717 More modularizing of shared app code (@cmdcolin)
• product-core
  • #3709 Silence console warn in CopyAndDelete test (@cmdcolin)
• app-core, core, embedded-core, product-core, text-indexing
  • #3701 Create app-core and embedded-core packages (@cmdcolin)
• core, product-core
  • #3661 Create packages/product-core containing shared code between the various products (@rbuels)

Committers: 6

• Caroline Bridge (@carolinebridge-oicr)
• Colin Diesh (@cmdcolin)
• Garrett Stevens (@garrettjstevens)
• Robert Buels (@rbuels)
• Shivang Dwivedi (@studentshivang)
• @Lilas-w
  Done in 3.89s.

[rbuels]

Let's give it as much time as we can to try to find problems from the refactor.

…

On Tue, May 9, 2023 at 2:32 PM Colin Diesh ***@***.***> wrote: changelog thus far. we can do some testing to see that the rootmodel and related refactors are stable and then move for a new release :) Unreleased (2023-05-09) 🚀 Enhancement - #3695 <#3695> Reduce re-drawing on alignments track paired read arcs/cloud display types ( @cmdcolin <https://github.com/cmdcolin>) 🐛 Bug Fix - core - #3687 <#3687> Take into account ML tag when showing MM tag on alignments, misc refactoring ( @cmdcolin <https://github.com/cmdcolin>) - Other - #3694 <#3694> Fix ability to filter certain fields in BAM/CRAM files ***@***.*** <https://github.com/cmdcolin>) - #3691 <#3691> Fix breakpoint split view alignment connections not pointing at right position in v2.5.0 ***@***.*** <https://github.com/cmdcolin>) - #3686 <#3686> Fix jbrowse create/jbrowse upgrade CLI intermittent failures ***@***.*** <https://github.com/cmdcolin>) 🏠 Internal - core, product-core - #3661 <#3661> Create packages/product-core containing shared code between the various products ***@***.*** <https://github.com/rbuels>) Committers: 2 - Colin Diesh ***@***.*** <https://github.com/cmdcolin>) - Robert Buels ***@***.*** <https://github.com/rbuels>) Done in 1.24s. ------------------------------ You can view, comment on, or merge this pull request online at: #3696 Commit Summary - f8eb98c <f8eb98c> [skip ci] New release File Changes (1 file <https://github.com/GMOD/jbrowse-components/pull/3696/files>) - *A* website/release_announcement_drafts/v2.6.0.md <https://github.com/GMOD/jbrowse-components/pull/3696/files#diff-698afe6aed8fde1a3034fa35642decea43ad52476ca9b9c3eb4b40e5a7ad7ae8> (3) Patch Links: - https://github.com/GMOD/jbrowse-components/pull/3696.patch - https://github.com/GMOD/jbrowse-components/pull/3696.diff — Reply to this email directly, view it on GitHub <#3696>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAASAFMC2U7MIWS4QOGTL4TXFKZW5ANCNFSM6AAAAAAX33PZYM> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>