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Hemco 3.10.1#17

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lizziel wants to merge 96 commits intogeos/latest_gccGEOS-ESM/HEMCO:geos/latest_gccfrom feature/ewlundgr/hemco_3.10.1GEOS-ESM/HEMCO:feature/ewlundgr/hemco_3.10.1Copy head branch name to clipboard

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Commits on Mar 14, 2024

• Update Python packages for ReadTheDocs builds

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Commits on Apr 22, 2024

• Update GitHub labels for issues/PRs that should not go stale

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• Now use the "stale" GitHub action instead of StaleBot

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• Merge PR geoschem#274 (Replace stalebot with "stale" GitHub action)

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Commits on May 23, 2024

• Updated the list of authors

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Commits on May 29, 2024

• Update Github issue templates to use issue forms

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• Merge PR geoschem#276 (Update Github issue templates to use issue forms)

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• Merge "dev/no-diff-to-benchmark" into the HEMCO 3.9.0 dev stream

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• Merge 'docs/dev' into the HEMCO 3.9.0 development stream

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• geos-chem-shared-docs update: Doc updates for GC 14.4.0 / HEMCO 3.9.0

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Commits on May 30, 2024

• Merge dev/3.9.0 into the main HEMCO branch

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• HEMCO 3.9.0 release commit

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Commits on Jun 4, 2024

• Now use comma-separated list for exempt-issue-labels

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Commits on Jun 5, 2024

• Merge PR geoschem#280 (Now use comma-separated list in stale.yml )

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Commits on Jun 28, 2024

• Merge no-diff-to-benchmark updates into main

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• HEMCO 3.9.1 release

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Commits on Jul 12, 2024

• Remove InvMEGAN manual diagnostics from hcox_megan_mod.F90

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Commits on Jul 15, 2024

• RTD update: Fix typos in hco-ref-guide/hemco-config.rst

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Commits on Jul 16, 2024

• Merge PR geoschem#282 (Remove manual InvMEGAN diagnostics)

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Commits on Jul 17, 2024

• RTD Updates: Convert several :option" tags to subsections

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Commits on Jul 18, 2024

• Update CONTRIBUTING.md

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• Removed broken link to GitHub flow in CONTRIBUTING.md

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Commits on Jul 24, 2024

• Merge "docs/dev" branch into HEMCO 3.9.2 development stream.

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• HEMCO 3.9.2 release

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Commits on Jul 26, 2024

• Hotfix: Fix invalid YAML syntax in .github/workflows/stale.yml

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Commits on Jul 31, 2024

• Update CHANGELOG w/ pressure fix for HEMCO standaloen

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• Convert PSFC from hPa -> Pa in HCO_CalcVertGrid

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Commits on Aug 1, 2024

• Merge PR geoschem#284 (Fix inconsistent pressure units in HEMCO standalone)

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• Add ALK6, C4H6, EBZ, STYR, TMB emission factors for GFED & FINN

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Commits on Aug 6, 2024

• Species ACR should use index geoschem#41 in hcox_gfed_include_gfed4.H

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Commits on Aug 13, 2024

• Merge "no-diff-to-benchmark" updates into main for HEMCO 3.9.3

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• HEMCO 3.9.3 release

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• Merge HEMCO 3.9.3 back into the 3.10.0 development stream

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Commits on Aug 14, 2024

• RTD update: Remove "Scale (or zero) emissions w/ a rectangular mask"

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Commits on Aug 15, 2024

• Update hcox_soilnox_mod.F90 to use soil temperature and parameterizarion from Yi Wang et al. (2021).

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• Add TSOIL1 field to ExtState object for soil NOx extension

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Commits on Aug 19, 2024

• Merge PR geoschem#285 (Add em. factors for ALK6, C4H6, EBZ, STYR, TMB)

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• PR geoschem#285 post-merge fix: Update CHANGELOG.md

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• Make minor changes to hcox_soilnox_mod.F90 for soil temperature option

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Commits on Aug 21, 2024

• Merge branch 'origin/dev/3.10.0' into feature/ywang_soil_nox

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Commits on Aug 29, 2024

• RTD update: Update GNU 10.2.0 -> GNU 12.2.0 in docs

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• geos-chem-shared-docs update: Use [email protected] in load-libraries-guide.rst

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Commits on Sep 3, 2024

• Fix compile issues and error messages in hcox_soilnox_mod.F90

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Commits on Sep 4, 2024

• Update jinja2 to 3.1.4 in docs/requirements.txt

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Commits on Sep 5, 2024

• Add fix to hcox_soilnox_mod.F90 to only initialize TSOIL when UseSoilTemp is true

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Commits on Sep 13, 2024

• Merge PR geoschem#287 (Updated Y. Wang soil NOx scheme as an option)

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Commits on Sep 24, 2024

• Bugfix: Restore stale workflow functionality

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Commits on Sep 27, 2024

• Merge PR geoschem#289 containing a fix for the stale issue Github workflow

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Commits on Oct 2, 2024

• geos-chem-shared-doc-updates: Moved config file doc to this repo etc.

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Commits on Oct 15, 2024

• geos-chem-shared-docs update: GC input data; GCHP History guide

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Commits on Nov 5, 2024

• Only write HEMCO standalone dry run header to log file if open

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• RTD update: Add documentation about the HEMCO standalone dry-run

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Commits on Nov 6, 2024

• Copy download_data.{py,yml} to HEMCO standalone rundir

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• Fixed issues in HEMCO standalone dry-run scripts

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• geos-chem-shared-docs update: Link to dry-run doc from GCID portal doc

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Commits on Nov 7, 2024

• Merge PR geoschem#295 (Add HEMCO-standalone dry run scripts)

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• RTD updates for 3.10.0; Also updated version numbers

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• Merge PR geoschem#292 (ReadTheDocs updates for HEMCO 3.10.0)

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Commits on Nov 8, 2024

• HEMCO 3.10.0 release

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Commits on Dec 3, 2024

• Added amIRoot condition to writing message about opening files with HEMCO

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• Merge pull request geoschem#296 from geoschem/bugfix/reduce_hemco_read_prints_in_mpi

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Commits on Dec 9, 2024

• Pass am_I_Root to several HEMCO subroutines to restrict prints if using MPI

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• Add field outLUN to HcoConfig object to store output LUN

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• Update prints that wrote to LUN 6 to instead write to HcoConfig%outLUN

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• Add optional LUN to 'noErr' hco_error_mod submodules to specify log

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• Always set LogFile to atm.log if using CESM

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Commits on Dec 17, 2024

• This commit is a squash of the following commits:

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• Use HcoState%Config%amIRoot rather than pass am_I_Root as argument

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• Pass verbose and return log LUN from HCO_LogFile_Open

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• Streamline HCO_Error, HCO_Warning, and HCO_Msg; remove HCO_IsVerb

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• Only print that opening volcano file once; fix compiler errors

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• Clean up hco_error_mod comments and remove warnings count

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• Fix bug in HCO_MSG call in TOMAS dustdead extension

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• Update HEMCO standalone with log updates

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• Changed duplicate diagnostic message to warning on root

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• Remove RC from HCO_WARNING argument list since not used

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• Include separator in HEMCO extension init message on even if not verbose

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• Update messages about warnings

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• Write warning about duplicate diagnostics to stdout and only if verbose

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• Update changelog and remove extraneous file

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• Edits to changelog

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• Update version string to 3.10.1

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Commits on Dec 18, 2024

• Fix typos in comments

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Commits on Dec 19, 2024

• Remove unused variable

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• Merge pull request geoschem#298 from geoschem/feature/improve_log_flexibility_in_hemco

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Commits on Dec 20, 2024

• Fix F77 formatting in dustdead extension (.F not .F90)

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• Remove print of ThisDiagn%MassScal which is never set in the model

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• Update changelog

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• Merge pull request geoschem#300 from geoschem/bugfix/run_with_geos

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Commits on Jan 3, 2025

• RTD Update: Added KPP-Standalone Supplemental Guide

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• geos-chem-shared-docs update: Updated error-guide.rst

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• Update documentation for HEMCO LogFile setting

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Commits on Jan 10, 2025

• Merge the dev/no-diff-to-benchmark into the 3.10.1 release branch

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• Merge docs/dev into release/3.10.1

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• HEMCO 3.10.1 release

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Commits on Jan 13, 2025

• Merge remote-tracking branch 'upstream/main' (3.10.1)

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