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name of python script "run_scanpyQC_rep.py" is in-consistent in scripts across panpipes #2

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deevdevil88 opened this issue Feb 6, 2023 · 0 comments
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name of python script "run_scanpyQC_rep.py" is in-consistent in scripts across panpipes #2

deevdevil88 opened this issue Feb 6, 2023 · 0 comments
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@deevdevil88
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hi,
I am getting an error, because panpipes qc_mm cannot find the script run_scanpyQC_rep.py . This is because in the python folder the script has been named differently i.e. run_scanpyQC_REP.py , than how it is called in pipeline_qc_mm.py on line [472] .

I have made the necessary amendments locally for my needs , but thought to mention it here.

Devika
@deevdevil88 deevdevil88 added the bug Something isn't working label Feb 6, 2023
@deevdevil88 deevdevil88 changed the title name of python script "run_scanpyQC_rep.py" in consistent in pipeline name of python script "run_scanpyQC_rep.py" is in-consistent in scripts across panpipes Feb 6, 2023
@deevdevil88 deevdevil88 mentioned this issue Feb 20, 2023
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crichgriffin added a commit that referenced this issue Feb 28, 2023
@crichgriffin
rename files to solve name of python script "run_scanpyQC_rep.py" is …
c476657 
…in-consistent in scripts across panpipes #2
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@crichgriffin @deevdevil88