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Prepend sample dataset GI PMF with a zero #70

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Nov 15, 2024
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Prepend sample dataset GI PMF with a zero #70

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Prepend sample dataset GI PMF with a zero
zsusswein Nov 13, 2024
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zsusswein Nov 13, 2024
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1 change: 1 addition & 0 deletions NEWS.md
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Expand Up @@ -8,6 +8,7 @@

* Drop old typos that snuck through the WORDLIST setup (#73)
* Turn off credential caching in WORDLIST update action preventing CI from restarting (#74)
* Prepend missing zero to the start of the GI PMF for the sample dataset

## Developer tooling

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3 changes: 2 additions & 1 deletion data-raw/sir_gt_pmf.R
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Expand Up @@ -11,7 +11,8 @@ sir_gt_pmf <- primarycensored::dpcens(0:26,
) # v0.4.0

# Drop first element because GI can't have same-day transmission
sir_gt_pmf <- sir_gt_pmf[2:27]
# and replace with a zero
sir_gt_pmf <- c(0, sir_gt_pmf[2:27])

# Renormalize to a proper PMF
while (abs(sum(sir_gt_pmf) - 1) > 1e-10) {
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