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Prepend sample dataset GI PMF with a zero #70

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merged 2 commits into from
Nov 15, 2024
Merged

Prepend sample dataset GI PMF with a zero #70

merged 2 commits into from
Nov 15, 2024

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zsusswein
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This missing zero was biasing Rt estimates to the dataset because
of the right-shifted GI probability mass.

Closes #69

@zsusswein zsusswein added bug Something isn't working v0.2.0 labels Nov 13, 2024
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codecov bot commented Nov 13, 2024

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All modified and coverable lines are covered by tests ✅

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I suggest you make sure this is in the input docs as this could be an easy mistake to make.

@seabbs seabbs enabled auto-merge (squash) November 15, 2024 10:19
This missing zero was biasing Rt estimates to the dataset because
of the right-shifted GI probability mass.

Closes #69
@seabbs seabbs merged commit a515d29 into main Nov 15, 2024
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@seabbs seabbs deleted the zs-prepend-zero branch November 15, 2024 12:52
zsusswein added a commit to CDCgov/cfa-epinow2-pipeline that referenced this pull request Dec 19, 2024
zsusswein added a commit to CDCgov/cfa-epinow2-pipeline that referenced this pull request Jan 14, 2025
zsusswein added a commit to CDCgov/cfa-epinow2-pipeline that referenced this pull request Jan 14, 2025
zsusswein added a commit to CDCgov/cfa-epinow2-pipeline that referenced this pull request Jan 14, 2025
* Add warning and autofix for improper GI PMF

With a non-zero first element, contravening assumptions of the
renewal equation.

* Move tests and package data to 0 first element

This is analagous to CDCgov/cfa-gam-rt#70

* Add a test for the new warning

And while I'm in here, clean up the flaky test helper which is
thrown by the parameters tests.

Closes #97

* Bump NEWS

* Use new name in NAMESPACE

* Update quoting
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Prepend 0 to the GI PMF
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