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Fix nextclade outputs #51

Merged
merged 3 commits into from
Feb 5, 2025
Merged

Fix nextclade outputs #51

merged 3 commits into from
Feb 5, 2025

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jpalmer37
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Resolves: #50

@dfornika
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dfornika commented Feb 5, 2025

Tests are failing because of java installation-related issue:

ERROR: Cannot find Java or it's a wrong version -- please make sure that Java 8 or later is installed
NOTE: Nextflow is trying to use the Java VM defined by the following environment variables:
 JAVA_CMD: /usr/lib/jvm/temurin-17-jdk-amd64/bin/java
 JAVA_HOME: /usr/lib/jvm/temurin-17-jdk-amd64

Will address separately.

@dfornika dfornika merged commit 40c94c4 into main Feb 5, 2025
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@dfornika dfornika dfornika approved these changes

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Fix Nextclade output format
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@jpalmer37 @dfornika