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Remove --hgvsg_use_accession due to a bug in VEP Continuous Integration #440: Commit a5f702d pushed by Redmar-van-den-Berg
February 21, 2025 06:54 19m 39s main
main
February 21, 2025 06:54 19m 39s
Rename the bam file inside the STAR rule Continuous Integration #439: Commit c128bf8 pushed by Redmar-van-den-Berg
February 19, 2025 13:38 20m 49s index_bam
index_bam
February 19, 2025 13:38 20m 49s
Use copy instead of ln to work around Snakemake clock skew bug Continuous Integration #438: Commit 29ac77c pushed by Redmar-van-den-Berg
February 18, 2025 12:58 9m 46s main
main
February 18, 2025 12:58 9m 46s
Add workaround for Snakemake bug Continuous Integration #437: Commit 057e1d1 pushed by Redmar-van-den-Berg
February 18, 2025 06:45 24m 14s main
main
February 18, 2025 06:45 24m 14s
Improve table layout in PDF report Continuous Integration #436: Commit 51dfeb6 pushed by Redmar-van-den-Berg
February 17, 2025 07:43 25m 14s main
main
February 17, 2025 07:43 25m 14s
Pass the ribosomal intervals only to RnaSeqMetrics Continuous Integration #435: Commit 20f68b7 pushed by Redmar-van-den-Berg
February 6, 2025 13:49 13m 9s main
main
February 6, 2025 13:49 13m 9s
Fix report tests to match new variant table Continuous Integration #434: Commit dabf2c7 pushed by Redmar-van-den-Berg
February 5, 2025 14:27 11m 23s main
main
February 5, 2025 14:27 11m 23s
Use picard CollectMultipleMetrics Continuous Integration #433: Commit 7aeaa6c pushed by Redmar-van-den-Berg
February 5, 2025 14:03 8m 4s main
main
February 5, 2025 14:03 8m 4s
Add genomic HGVS to the PDF report, add column for exon number Continuous Integration #432: Commit 7d66741 pushed by Redmar-van-den-Berg
February 5, 2025 08:32 8m 33s main
main
February 5, 2025 08:32 8m 33s
Move link check to release tests Continuous Integration #431: Commit adb95d2 pushed by Redmar-van-den-Berg
February 5, 2025 07:43 7m 52s main
main
February 5, 2025 07:43 7m 52s
Include genomic HGVS in VEP annotation Continuous Integration #430: Commit ce48223 pushed by Redmar-van-den-Berg
February 5, 2025 07:25 1m 12s main
main
February 5, 2025 07:25 1m 12s
Run VEP vep_cache folder or with GTF/FASTA Continuous Integration #429: Commit ffeb955 pushed by Redmar-van-den-Berg
February 4, 2025 13:06 9m 10s main
main
February 4, 2025 13:06 9m 10s
Fix a bug with caching of report assets Continuous Integration #428: Commit e1fa04d pushed by Redmar-van-den-Berg
January 30, 2025 17:33 16m 41s main
main
January 30, 2025 17:33 16m 41s
Run VarDict job wiht 8 threads Continuous Integration #427: Commit 806ddf8 pushed by Redmar-van-den-Berg
January 29, 2025 14:12 16m 26s main
main
January 29, 2025 14:12 16m 26s
Include all report files as input Continuous Integration #426: Commit 1bb763c pushed by Redmar-van-den-Berg
January 28, 2025 11:58 23m 47s main
main
January 28, 2025 11:58 23m 47s
Revert "Rename the BAM file in the STAR rule" Continuous Integration #425: Commit 8173676 pushed by Redmar-van-den-Berg
January 28, 2025 10:35 2m 7s main
main
January 28, 2025 10:35 2m 7s
Rename the BAM file in the STAR rule Continuous Integration #424: Commit 01de29f pushed by Redmar-van-den-Berg
January 23, 2025 06:57 11m 6s main
main
January 23, 2025 06:57 11m 6s
Add slurm executor to conda environment Continuous Integration #423: Commit 0041049 pushed by Redmar-van-den-Berg
January 22, 2025 13:53 32m 13s main
main
January 22, 2025 13:53 32m 13s
Fix bug with 'minimised' field in VEP output Continuous Integration #422: Commit 7d75831 pushed by Redmar-van-den-Berg
January 13, 2025 13:48 14m 58s main
main
January 13, 2025 13:48 14m 58s
Retry documentation links three times Continuous Integration #421: Commit b24c79b pushed by Redmar-van-den-Berg
January 13, 2025 10:01 15m 28s main
main
January 13, 2025 10:01 15m 28s
Remove the Snakemake version from the PDF report Continuous Integration #420: Commit cf5bc43 pushed by Redmar-van-den-Berg
January 13, 2025 07:34 1m 14s main
main
January 13, 2025 07:34 1m 14s
Update Snakemake to 8.24 Continuous Integration #419: Commit 717d3ff pushed by Redmar-van-den-Berg
January 13, 2025 07:09 24m 24s main
main
January 13, 2025 07:09 24m 24s
Fix a bug with the Java runtime environment for Picard Continuous Integration #418: Commit 608ffee pushed by Redmar-van-den-Berg
January 10, 2025 13:24 19m 50s main
main
January 10, 2025 13:24 19m 50s
Fix formatting changelog Continuous Integration #417: Commit ebcc380 pushed by Redmar-van-den-Berg
January 7, 2025 10:28 15m 47s main
main
January 7, 2025 10:28 15m 47s
Revert "Local changes for HGVS-like descriptions" Continuous Integration #416: Commit c52c31f pushed by Redmar-van-den-Berg
January 6, 2025 10:20 12m 39s main
main
January 6, 2025 10:20 12m 39s