Merge latest staging with Job execution #710
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Added fields to store version (ExperimentUpload)
Fields in ExperimentUpload table to record incoming data version, checks in loader to ensure only up-to-date data is loaded. Fails if major version doesn't match. Also contains changes necessary for XCA data uploader tool.
LHS data versioning (issue 1612)
ExperimentUpload objects output, better format and filters (issue 1627)
Additional fields to api/target_experiment_uploads endpoint (issue 1627)
alanbchristie
added a commit
that referenced
this pull request
Jan 23, 2025
* fix: Attempt to fix AS api check and missing JobRequest view * fix: Fix missing as_view() * build: Use of package-mode to avoid "does not contain any element" error * build: Revert package mode * fix: Better AS/DM errors logs * fix: DM and AS response expected to be 200 * fix: Transfer and Job views now return 202 (was 200) * fix: Switch to using longcode query * docs: Add a dev note for file transfer * docs: Doc tweak * refactor: Minor style change (assignment) * fix: An attempt to fix the file transfer validation * style: Adds log to file-transfer validation * docs: Doc tweak (no model change) * fix: Attempt to fix file transfer (file/path references) * style: More log on transfer * fix: Fix FILE_ROOT * fix: Fix JobRequest has-finished check * fix: Better Job launch debug * fix: Attempt to fix job launch error * fix: Attempt to fix non-serialisable DmApiRv * fix: Protein and compound now checked against target * fix: Fix lint issue * fix: Fix use of Target pk rather than Title * style: Extra debug in set_mol() * style: Adjust log * style: Alter slit to use '-' rather than '_' (squonk job execution) * style: Back to original split * fix: Hack SIteObservation search (job execution experiment) * fix: Incorrect substitution in hack * fix: Fix clean-up CS name * fix: Creating ober-ride now returns 201 (as 200) * fix: Job config now returns the full list * fix: RHS lookup now tries to get long-code from ref-mols * fix: Attempt to move job-request to /api * fix: Fix view (for API) * fix: More build fixes * fix: Attempt to fix JR view * fix: FileTransfer now 'unquotes' the proteins & compounds * fix: JobRequest now does an unquote() on the JobSpec * fix: Fix ')' in longcode * fix: Attempt to move job_access to /api * fix: Better exception handling * Merge latest staging with Job execution (#710) * feat: data version checker Added fields to store version (ExperimentUpload) * stashing * stashing * feat: Adds LHS data versioning Fields in ExperimentUpload table to record incoming data version, checks in loader to ensure only up-to-date data is loaded. Fails if major version doesn't match. Also contains changes necessary for XCA data uploader tool. * feat: ExperimentUpload objects output, better format and filters * feat: additional fields to api/target_experiment_uploads endpoint --------- Co-authored-by: Kalev Takkis <[email protected]> * feat: Attempt to add a /reset endpoint (and fix job_access) * fix: Attempt to fix run-time errors * fix: Attempt to fix reset view * fix: Attempt to fix job-access endpoint * fix: Use of mixin for JobAccess * feat: Attempt to fix job-access view * fix: Attempt to fix reset view * feat: Extra logging on reset * fix: Attempt to fix reset endpoint * fix: Help extensions understand the DB engine * feat: Removed reset view * fix: Add debug for upload * fix: Fix overrride for latest Jobs * style: Log adjustments --------- Co-authored-by: Alan Christie <[email protected]> Co-authored-by: Kalev Takkis <[email protected]>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.