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CMAQ-WRF coupling #1432

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CMAQ-WRF coupling #1432

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0426150
These modification to facilitate constructing WRF-CMAQ coupled model
dwongepa Mar 13, 2021
82e994d
Merge branch 'develop' into epa_develop
dwongepa Mar 14, 2021
018220c
Modified dyn_nmm/module_PHYSICS_CALLS.F so that the WRF-CMAQ coupled
dwongepa Mar 15, 2021
9d9ab1f
Merge branch 'epa_develop' of https://github.com/dwongepa/WRF into ep…
dwongepa Mar 15, 2021
8b48332
Fixed a bug so it can handle gfortran compiler case properly
dwongepa Jun 8, 2021
e8e02c7
trigger jenkins w/o NMM HWRF
davegill Sep 27, 2021
4c767f6
cmaq 00:07
davegill Dec 9, 2021
0fc9bb8
cmaq 17:29
davegill Dec 10, 2021
3324c42
Encase "double precision exponents" within default word size ifdefs
davegill Dec 17, 2021
0bc9d02
D0 -> E0 13:57
davegill Dec 17, 2021
7aa3284
Fix vertical index extent initialization
davegill Dec 17, 2021
0be484e
CMAQ race 10:50
davegill Dec 18, 2021
f03b459
Just 0.0,1.0 init, no exponents
davegill Dec 18, 2021
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4 changes: 4 additions & 0 deletions Makefile
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Expand Up @@ -1067,6 +1067,10 @@ physics :
@ echo '--------------------------------------'
if [ $(WRF_CHEM) -eq 0 ] ; then \
( cd phys ; $(MAKE) CF2=" " ) ; \
if [ $(WRF_CMAQ) -eq 1 ] ; then \
@ echo '----------- make cmaq ----------------' ; \
( rm -f main/libcmaqlib.a; cd cmaq ; $(MAKE) -f Makefile.twoway ) ; \
fi \
else \
( cd phys ; $(MAKE) CF2="$(CHEM_FILES2)" ) ; \
fi
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8 changes: 8 additions & 0 deletions Registry/Registry.EM
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Expand Up @@ -4,6 +4,14 @@
include registry.dimspec
include registry.em_shared_collection

# WRF-CMAQ coupled model
rconfig integer wrf_cmaq_option namelist,wrf_cmaq 1 0
rconfig integer wrf_cmaq_freq namelist,wrf_cmaq 1 1
rconfig integer met_file_tstep namelist,wrf_cmaq 1 10000

rconfig logical direct_sw_feedback namelist,wrf_cmaq 1 .false.
rconfig logical feedback_restart namelist,wrf_cmaq 1 .false.

# added to output 5 for ESMF
state real landmask ij misc 1 - i0125rh056d=(interp_fcnm_imask)u=(copy_fcnm) "LANDMASK" "LAND MASK (1 FOR LAND, 0 FOR WATER)" ""
state real lakemask ij misc 1 - i012rhd=(interp_fcnm_imask)u=(copy_fcnm) "LAKEMASK" "LAKE MASK (1 FOR LAKE, 0 FOR NON-LAKE)" ""
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51 changes: 51 additions & 0 deletions Registry/registry.WRF-CMAQ-twoway
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@@ -0,0 +1,51 @@
#state real mass_ws_i ikj twoway_feedback_data 1 - r "mass_ws_i" "Water soluble i mode" "ug/m**3"
#state real mass_ws_j ikj twoway_feedback_data 1 - r "mass_ws_j" "Water soluble j mode" "ug/m**3"
#state real mass_ws_k ikj twoway_feedback_data 1 - r "mass_ws_k" "Water soluble k mode" "ug/m**3"
#state real mass_in_i ikj twoway_feedback_data 1 - r "mass_in_i" "Water insoluble i mode" "ug/m**3"
#state real mass_in_j ikj twoway_feedback_data 1 - r "mass_in_j" "Water insoluble j mode" "ug/m**3"
#state real mass_in_k ikj twoway_feedback_data 1 - r "mass_in_k" "Water insoluble k mode" "ug/m**3"
#state real mass_ec_i ikj twoway_feedback_data 1 - r "mass_ec_i" "Elemental carbon i mode" "ug/m**3"
#state real mass_ec_j ikj twoway_feedback_data 1 - r "mass_ec_j" "Elemental carbon j mode" "ug/m**3"
#state real mass_ec_k ikj twoway_feedback_data 1 - r "mass_ec_k" "Elemental carbon k mode" "ug/m**3"
#state real mass_ss_i ikj twoway_feedback_data 1 - r "mass_ss_i" "Seasalt i mode" "ug/m**3"
#state real mass_ss_j ikj twoway_feedback_data 1 - r "mass_ss_j" "Seasalt j mode" "ug/m**3"
#state real mass_ss_k ikj twoway_feedback_data 1 - r "mass_ss_k" "Seasalt k mode" "ug/m**3"
#state real mass_h2o_i ikj twoway_feedback_data 1 - r "mass_h2o_i" "water i mode" "ug/m**3"
#state real mass_h2o_j ikj twoway_feedback_data 1 - r "mass_h2o_j" "water j mode" "ug/m**3"
#state real mass_h2o_k ikj twoway_feedback_data 1 - r "mass_h2o_k" "water k mode" "ug/m**3"
#state real dgn_i ikj twoway_feedback_data 1 - r "dgn_i" "diameter i mode" "m"
#state real dgn_j ikj twoway_feedback_data 1 - r "dgn_j" "diameter j mode" "m"
#state real dgn_k ikj twoway_feedback_data 1 - r "dgn_k" "diameter k mode" "m"
#state real sig_i ikj twoway_feedback_data 1 - r "sig_i" "standard deviations i mode" ""
#state real sig_j ikj twoway_feedback_data 1 - r "sig_j" "standard deviations j mode" ""
#state real sig_k ikj twoway_feedback_data 1 - r "sig_k" "standard deviations k mode" ""

#state real prev_rainnc ij twoway_feedback_data 1 - r "prev_rainnc" "previous accumlated rainnc" "mm"
#state real prev_rainc ij twoway_feedback_data 1 - r "prev_rainc" "previous accumlated rainc" "mm"

#state real ozone ikj twoway_feedback_data 1 - r "OZONE" "ozone value" ""

#state real sw_gtauxar_01 ikj misc 1 - hr "SW_GTAUXAR_01" "SW Optical depth of lamda = 0.388 um" ""
#state real sw_gtauxar_02 ikj misc 1 - hr "SW_GTAUXAR_02" "SW Optical depth of lamda = 0.533 um" ""
#state real sw_gtauxar_03 ikj misc 1 - hr "SW_GTAUXAR_03" "SW Optical depth of lamda = 0.702 um" ""
#state real sw_gtauxar_04 ikj misc 1 - hr "SW_GTAUXAR_04" "SW Optical depth of lamda = 1.010 um" ""
#state real sw_gtauxar_05 ikj misc 1 - hr "SW_GTAUXAR_05" "SW Optical depth of lamda = 1.271 um" ""
#state real sw_ttauxar_01 ij misc 1 - hr "SW_TTAUXAR_01" "Optical depth sum of SW_GTAUXAR_01" ""
#state real sw_ttauxar_02 ij misc 1 - hr "SW_TTAUXAR_02" "Optical depth sum of SW_GTAUXAR_02" ""
#state real sw_ttauxar_03 ij misc 1 - hr "SW_TTAUXAR_03" "Optical depth sum of SW_GTAUXAR_03" ""
#state real sw_ttauxar_04 ij misc 1 - hr "SW_TTAUXAR_04" "Optical depth sum of SW_GTAUXAR_04" ""
#state real sw_ttauxar_05 ij misc 1 - hr "SW_TTAUXAR_05" "Optical depth sum of SW_GTAUXAR_05" ""
#state real sw_asy_fac_01 ikj misc 1 - hr "SW_ASY_FAC_01" "Corresponding Asymmetry Factor of SW_GTAUXAR_01" ""
#state real sw_asy_fac_02 ikj misc 1 - hr "SW_ASY_FAC_02" "Corresponding Asymmetry Factor of SW_GTAUXAR_02" ""
#state real sw_asy_fac_03 ikj misc 1 - hr "SW_ASY_FAC_03" "Corresponding Asymmetry Factor of SW_GTAUXAR_03" ""
#state real sw_asy_fac_04 ikj misc 1 - hr "SW_ASY_FAC_04" "Corresponding Asymmetry Factor of SW_GTAUXAR_04" ""
#state real sw_asy_fac_05 ikj misc 1 - hr "SW_ASY_FAC_05" "Corresponding Asymmetry Factor of SW_GTAUXAR_05" ""
#state real sw_ssa_01 ikj misc 1 - hr "SW_SSA_01" "Corresponding Single scattering Albedo of SW_GTAUXAR_01" ""
#state real sw_ssa_02 ikj misc 1 - hr "SW_SSA_02" "Corresponding Single scattering Albedo of SW_GTAUXAR_02" ""
#state real sw_ssa_03 ikj misc 1 - hr "SW_SSA_03" "Corresponding Single scattering Albedo of SW_GTAUXAR_03" ""
#state real sw_ssa_04 ikj misc 1 - hr "SW_SSA_04" "Corresponding Single scattering Albedo of SW_GTAUXAR_04" ""
#state real sw_ssa_05 ikj misc 1 - hr "SW_SSA_05" "Corresponding Single scattering Albedo of SW_GTAUXAR_05" ""

#state real sw_zbbcddir ij misc 1 - hr "SW_ZBBCDDIR" "Clear sky downward direct shortwave flux" "W m-2"
#state real sw_dirdflux ij misc 1 - hr "SW_DIRDFLUX" "Direct downward shortwave surface flux" "W m-2"
#state real sw_difdflux ij misc 1 - hr "SW_DIFDFLUX" "Diffuse downward shortwave surface flux" "W m-2"
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@dwongepa
Is there a reason why these are all commented out?

We probably need to have a CMAQ package variable for when they are uncommented.

1 change: 1 addition & 0 deletions Registry/registry.em_shared_collection
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Expand Up @@ -28,3 +28,4 @@ include registry.hyb_coord
include registry.new3d_wif
include registry.trad_fields
include registry.solar_fields
include registry.WRF-CMAQ-twoway
155 changes: 154 additions & 1 deletion arch/Config.pl
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Expand Up @@ -5,6 +5,9 @@
# Be sure to run as ./configure (to avoid getting a system configure command by mistake)
#

use Cwd qw(getcwd);
$wrf_cmaq_option = $ENV{'WRF_CMAQ'}; # determine building WRF-CMAQ coupled model or not

select((select(STDOUT), $|=1)[0]);
$sw_perl_path = perl ;
$sw_netcdf_path = "" ;
Expand Down Expand Up @@ -444,11 +447,157 @@
$latchon = 0 ;
while ( <CONFIGURE_DEFAULTS> )
{
if ( $_ =~ /ifort compiler/ )
{ $lioapi = 'Linux2_x86_64ifort';
}
elsif ( $_ =~ /PGI compiler/ )
{ $lioapi = 'Linux2_x86_64pg';
}
elsif ( $_ =~ /gfortran compiler/ )
{ $lioapi = 'Linux2_x86_64gfort';
}

if ( substr( $_, 0, 5 ) eq "#ARCH" && $latchon == 1 )
{
close CONFIGURE_DEFAULTS ;
if ( $sw_opt_level eq "-f" ) {
open CONFIGURE_DEFAULTS, "cat ./arch/postamble ./arch/noopt_exceptions_f |" or die "horribly" ;

# determine whether variable EM_MODULE_DIR contains -I../cmaq or not
my $file = "Makefile";
open(FH, $file) or die("File $file not found");

$lib_path_wo_cmaq = 1;
while ( my $String = <FH> )
{ if($String =~ /-I..\/dyn_em -I..\/cmaq/)
{ $lib_path_wo_cmaq = 0;
}
}
close (FH);

# determine whether declarations in Registry/registry.WRF-CMAQ-twoway is commented out or not
my $file = "Registry/registry.WRF-CMAQ-twoway";
open (FH, $file) or die("File $file not found");

$registry_wo_cmaq = 0;
while ( my $String = <FH> )
{ if($String =~ /#state/)
{ $registry_wo_cmaq = 1;
}
}
close (FH);

# determine whether express #NOWIN LIB_BUNDLED contains $(IOAPI_LIB) or not
my $file = "arch/preamble";
open (FH, $file) or die("File $file not found");

$bundle_wo_ioapi = 1;
while ( my $String = <FH> )
{ if ( $String =~ /IOAPI_LIB/ )
{ $bundle_wo_ioapi = 0;
}
}
close (FH);

if ( $wrf_cmaq_option eq 1 ) # build WRF-CMAQ coupled model
{ system("cp Registry/registry.WRF-CMAQ-twoway_full Registry/registry.WRF-CMAQ-twoway");

if ( $lib_path_wo_cmaq == 1 )
{ open (FILE, "<Makefile") || die "File not found";
my @lines = <FILE>;
close (FILE);

foreach ( @lines )
{ $_ =~ s/ -I..\/dyn_em/ -I..\/dyn_em -I..\/cmaq/g;
}

open (FILE, ">Makefile") || die "File not found";
print FILE @lines;
close (FILE);
}

if ( $registry_wo_cmaq == 1 )
{ open (FILE, "<Registry/registry.WRF-CMAQ-twoway") || die "File not found";
my @lines = <FILE>;
close (FILE);

foreach (@lines)
{ $_ =~ s/#state/state/g;
}

open (FILE, ">Registry/registry.WRF-CMAQ-twoway") || die "File not found";
print FILE @lines;
close (FILE);
}

if ( $bundle_wo_ioapi == 1 )
{ open (FILE, "<arch/preamble") || die "File not found";
my @lines = <FILE>;
close (FILE);

foreach (@lines)
{ $_ =~ s/#NOWIN LIB_BUNDLED = \\/#NOWIN LIB_BUNDLED = \$(IOAPI_LIB) \\/g;
}

open (FILE, ">arch/preamble") || die "File not found";
print FILE @lines;
close (FILE);
}

open (FH, '>', wrf_cmaq_path) or die $! ;
$ioapi_path = $ENV{'IOAPI'} ;
print FH "CMAQLIB = libcmaqlib.a \n" ;
print FH "IOAPI = $ioapi_path\n" ;
print FH "LIOAPI = $lioapi\n" ;
print FH "IOAPI_LIB = -L$ioapi_path/$lioapi -lioapi \n" ;
close (FH) ;
open CONFIGURE_DEFAULTS, "cat wrf_cmaq_path ./arch/postamble ./arch/noopt_exceptions_f |" or die "horribly" ;
}
else
{ if ( $lib_path_wo_cmaq == 0 )
{ open (FILE, "<Makefile") || die "File not found";
my @lines = <FILE>;
close (FILE);

foreach (@lines)
{ $_ =~ s/ -I..\/cmaq//g;
}

open (FILE, ">Makefile") || die "File not found";
print FILE @lines;
close (FILE);

}

if ( $registry_wo_cmaq == 0 )
{ open (FILE, "<Registry/registry.WRF-CMAQ-twoway") || die "File not found";
my @lines = <FILE>;
close (FILE);

foreach(@lines)
{ $_ =~ s/state/#state/g;
}

open (FILE, ">Registry/registry.WRF-CMAQ-twoway") || die "File not found";
print FILE @lines;
close (FILE);
}

if ( $bundle_wo_ioapi == 0 )
{ open (FILE, "<arch/preamble") || die "File not found";
my @lines = <FILE>;
close (FILE);

foreach (@lines)
{ $_ =~ s/ \$\(IOAPI_LIB\)//g;
}

open (FILE, ">arch/preamble") || die "File not found";
print FILE @lines;
close (FILE);
}

open CONFIGURE_DEFAULTS, "cat ./arch/postamble ./arch/noopt_exceptions_f |" or die "horribly" ;
}
} else {
open CONFIGURE_DEFAULTS, "cat ./arch/postamble ./arch/noopt_exceptions |" or die "horribly" ;
}
Expand Down Expand Up @@ -777,6 +926,10 @@
close POSTAMBLE ;
close ARCH_NOOPT_EXCEPTIONS ;

if ( $wrf_cmaq_option eq 1 )
{ unlink "wrf_cmaq_path";
}

open CONFIGURE_WRF, "> configure.wrf" or die "cannot append configure.wrf" ;
open ARCH_PREAMBLE, "< arch/preamble" or die "cannot open arch/preamble" ;
my @preamble;
Expand Down
8 changes: 6 additions & 2 deletions clean
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Expand Up @@ -3,11 +3,15 @@
set nonomatch


foreach dir ( frame chem share dyn_em dyn_nmm phys main tools wrftladj )
foreach dir ( frame chem share dyn_em dyn_nmm phys cmaq main tools wrftladj )
if ( -d $dir ) then
( cd $dir ; echo $dir ; /bin/rm -f core wrf *.f90 *.exe *.kmo *.mod *.o *.obj *.inc *.F90 *.a \
if ( $dir == cmaq ) then
( cd $dir ; echo $dir ; /bin/rm -f *.o *.mod ) >& /dev/null
else
( cd $dir ; echo $dir ; /bin/rm -f core wrf *.f90 *.exe *.kmo *.mod *.o *.obj *.inc *.F90 *.a \
db_* Warnings module_state_description.F module_dm.F gmeta \
wrfdata whatiread rsl.* show_domain* ) >& /dev/null
endif
endif
end

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7 changes: 7 additions & 0 deletions configure
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Expand Up @@ -25,6 +25,7 @@ while [ $# -ge 1 ]; do
-r8) rword="-r8" ;;
-time) shift ; FORTRAN_COMPILER_TIMER=$1 ;;
chem) WRF_CHEM=1 ;;
cmaq) WRF_CMAQ=1 ;;
kpp) WRF_KPP=1 ;;
radardfi) WRF_DFI_RADAR=1 ;;
wrfda) wrf_core=DA_CORE ;;
Expand Down Expand Up @@ -482,6 +483,12 @@ if [ -n "$WRF_DFI_RADAR" ] ; then
compileflags="${compileflags}!-DWRF_DFI_RADAR=1"
fi
fi

if [ -n "$WRF_CMAQ" ] ; then
echo building WRF with CMAQ option
compileflags="${compileflags}!-DWRF_CMAQ"
fi

if [ -n "$WRF_CHEM" ] ; then
if [ $WRF_CHEM = 1 ] ; then
echo building WRF with chemistry option
Expand Down
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