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OSYM Isolating Symbols in Alignments #97

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weka511 opened this issue Dec 18, 2020 · 1 comment
Open

OSYM Isolating Symbols in Alignments #97

weka511 opened this issue Dec 18, 2020 · 1 comment
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Do this next New Feature

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@weka511
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weka511 commented Dec 18, 2020

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@weka511 weka511 self-assigned this Dec 18, 2020
@weka511 weka511 assigned weka511 and unassigned weka511 Jan 25, 2021
weka511 added a commit that referenced this issue Jan 25, 2021
@weka511
Started #97 (skeleton)
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@weka511 weka511 removed their assignment Mar 13, 2023
weka511 added a commit that referenced this issue Jun 13, 2024
@weka511
Started #97
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weka511 added a commit that referenced this issue Jun 15, 2024
@weka511
#97 Added test data
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weka511 added a commit that referenced this issue Jun 15, 2024
@weka511
#97 Refactored test code
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weka511 added a commit that referenced this issue Jun 19, 2024
@weka511
#97 Created test case for ctea
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weka511 added a commit that referenced this issue Jul 17, 2024
@weka511
#97 Sample test passes
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weka511 commented Jul 17, 2024

Naive implementation (as used for sample test) is too slow for Rosalind: I have just terminated after 10 minutes.

weka511 added a commit that referenced this issue Jul 17, 2024
@weka511
#97 I've just found that osym is calling align(), not get_highest_sco…
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…ring_alignment
weka511 added a commit that referenced this issue Jul 18, 2024
@weka511
#97 Misc cosmetic chnges
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weka511 added a commit that referenced this issue Jul 18, 2024
@weka511
#97 Misc cosmetic chnges
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weka511 added a commit that referenced this issue Jul 19, 2024
@weka511
#97 Misc cosmetic changes
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