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Add handling for complete softclip tails that end up on the far side of a self-loop edge #4531

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merged 4 commits into from
Mar 5, 2025

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Changelog Entry

To be copied to the draft changelog by merger:

  • vg giraffe can now handle self-loop cycles that happen to fall exactly where it wants to put an all-insertion edit.

Description

This should fix #4463, or at least one cause of it.

The function I'm touching here should really be broken out and given comprehensive unit tests, though, to prevent this kind of problem from happening again.

@adamnovak adamnovak merged commit ffdb2b0 into master Mar 5, 2025
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vg pack error
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