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Update the wiki with a test for long read rpvg
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adamnovak committed Jan 24, 2025
1 parent fd6da1c commit 1c00e2e
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Showing 3 changed files with 9 additions and 1 deletion.
2 changes: 1 addition & 1 deletion doc/wiki
Submodule wiki updated from 0e6af6 to 44c0fe
4 changes: 4 additions & 0 deletions test/longread/annotations.gff3
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CHM13#0#chr1 Liftoff gene 10 1000 . + . gene_name=FakeGene;Name=FakeGene
CHM13#0#chr1 Liftoff transcript 10 100 . + . gene_name=FakeGene;Name=FakeGene;transcript_id=FakeTranscript
CHM13#0#chr1 Liftoff exon 20 200 . + . gene_name=FakeGene;Name=FakeGene;Parent=FakeTranscript;ID=exon:FakeTranscript:0
CHM13#0#chr1 Liftoff exon 500 1000 . + . gene_name=FakeGene;Name=FakeGene;Parent=FakeTranscript;ID=exon:FakeTranscript:1
4 changes: 4 additions & 0 deletions test/longread/kinnex.fq
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@S20_13790
TGACTATGCTATTGGTTTATGTATTTACTATACTGTATCATTATTATTTTAGATCAGACATTTTCTATTTATTTTTTAAAAAGCTAACTGTAAAACAGCCTCAGACAGGTCCTTCAGGAGGTATCCCAGCAGAAGACACTGTTAACACAGGAGATGACAGCTCCGTGTGTTACTGCCTTCCCAGTGACATAATGCGGAGGTGGAAGATAGTGATATTGATGATCCTGACCCTGTATAGGCCTAGACTAATATGTGTGTTTTTGTTTCCGTTTTTAACCAAAAAAAAAAAAAAAAAAAGTTTAAGTAAAAATAAATTTTTTTAAAAAAGAAAAAAGCATATAGAATTAGAATATAAAAAAAGAAAATATTTTTGTGCAACAATATCTTCATGTTTTAAACTAAGCGTTATTACAAAAAAGTCAAATAAGTTTTTAAAAATTAAAAAAATTACAAAGTAAAAAAGTTCCAGTAAGCTAAAGATTAATTTACACACTGTAAATTTGTGTCCTGTATGATTTTTTATGTTTTATACTGTATTTTACTATGTTCAGTATGCTTAGATACACAGATACACAATTGTGTCACATCTGCCTGCTGCATTCAGTACAGTAACATGCTGCACAAGTTTGTAGCCTAGGAGCAATAGGCTATACCATATAGGCTAGATGTGCAGTAGTCACTATCATCTTGGTCTGTTTGAGTACACTCTAGGATGGCTGCACAACAATGAAATTGCCAAACACATTTCTGGAGTGCAAAACTCAGTATCTAGAGGAAGTATTTTAAGTATTAATGGTATTTAACATTTCTCAGAACATCACACCCCATCCTTCAACAACACATGACTATATATAATGCAAACACTAGTCAAAAGAAAGCCAAGTAGCTATATTAATATAAAACAAAGACATCAAAAAAAGAACTGCCTAGCATAGAGGGACATAACGCAATAATAAAAGGATCAAATCACCACTAAGATCTAAAAGTCCTAAATATGTATGCACCTACCACCAGAGCTTCAAAACACATACAGCAAAACCAATACAAGTGGAAAGAAAAATAGACAAATCCACAATAGCAACTGAAGACTTCAAAACTCTCAGCCCACTGTCACCCTGTTACTCGACATAGTACTGGAAGTCCTAGCTAGAGCTATCGGACAAGAGAAACATATAGGGGGAATCCAAATTGGAAAGGAAATAATCAAATTATCTTTGTTTGCTGATGATACGAACGTATATTTGCAAAAACCTAAAGATTTCACAAGAAAACTATTAGAACTGATCAATTCAGTAGTTGCAGGATACAAAATCAACATACAAAAATAAGTAGCATTTCTATATGCCAACAGTAAACACTGTGAAAAAGAAATTTTAAAAGTAATCCCATTTACAATAGCCACACATAAAATTAAATACCTAGGAATTAACTTCACCGAAGAAGTGAAAGATCTCTATGATGAAAACTATAAAACACTGATGAAGGCAATTGAAGGATACCAAAAAATGAAAAAATATTCCATGTACATGGATTGGAAAAATCAATATTGTTAAAATGTCCATACTACCCAAAGCAATCTACAGATTCAATGCAATCCCTATCGAAATACCAATGACATTCTTCACAGAAATAGAAAAAACAATCTGAAAATTTATATGAAACTACAAAAGACCCAGAATAGTTACAGCTATCCTAAGCAAAAAGAACAAAACTGGAGGAATCACATTACCTAACTTCAAATTATACTGCAGAGCTATAGTAACCAAAACAGCAAGTTACTGGCATAAAAACAGACACATAGACCAATGGACCAGAATAGAGAACCCAGAAACAAAATCCACACATCTATGGTGAACTTGTTTTTGACAAAGGTGCCAAGAACATATACTGGGGAAAAGACAGTCTTTTCATAAATGGTGCTGGGAAAACTGGATATCCATATGCAGAAGAATGAAAATAGACTCCTATCTCTCACTGTCTACAAAAATCAAATTAAAACA
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vg CI tests complete for branch lr-giraffe-docs. View the full report here.

16 tests passed, 0 tests failed and 0 tests skipped in 17507 seconds

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