Upgrade to Python 3.10 and MongoDB 7.0 #13
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* pull in updates in oar-metadata * update pdr-specific dependencies * launch mongo server for unit-testing
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This PR to another branch providing DBIO advanced searching--subject to its own PR (#12)--is provided to document some substantial changes that will allow #12 to be merged. That branch's unit tests were failing under GitHub Actions CI because Mongo 4.4 is no longer supported. A key focus of this PR, therefore, is to upgrade the use of MongoDB to v7.0, which in turn requires a migration to Python 3.10. There were previously a handful of deprecated bits of python not compliant with 3.10 (namely importing types from
collectionsinstead ofcollections.abc). These have been fixed and the supporting docker containers have been updated accordingly. (This motivated updating the containers' base OS to Ubuntu 22.)A few other bug fixes are included in this PR regarding the use of
nistoar.web.webrecordin the MIDAS web service. It also removes the on-the-fly generation of the freetext index needed by advanced searching; creating this index is now handled at theoar-dockerorchestration level (when the MongoDB instance comes up for the first time.)Finally, some files that are normally generated on the fly (version files) but were mistakenly checked in have been removed.