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| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2024-12-15 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
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| On 2024-12-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #491](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#491/) | ||
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| ## Graph/Display Data | ||
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| - pygenometracks was updated to [59fd173ac850](https://toolshed.g2.bx.psu.edu/view/iuc/pygenometracks/59fd173ac850) | ||
| - volcanoplot was updated to [99ace6c1ff57](https://toolshed.g2.bx.psu.edu/view/iuc/volcanoplot/99ace6c1ff57) | ||
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| ## QIIME 2 | ||
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| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
| - qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623) | ||
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| ## Proteomics | ||
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| - fragpipe was updated to [e969a182e3cb](https://toolshed.g2.bx.psu.edu/view/galaxyp/fragpipe/e969a182e3cb) | ||
| - proteinortho was updated to [6140163233a5](https://toolshed.g2.bx.psu.edu/view/iuc/proteinortho/6140163233a5) | ||
| - proteinortho_grab_proteins was updated to [36dffb2bc194](https://toolshed.g2.bx.psu.edu/view/iuc/proteinortho_grab_proteins/36dffb2bc194) | ||
| - proteinortho_summary was updated to [387d3633cade](https://toolshed.g2.bx.psu.edu/view/iuc/proteinortho_summary/387d3633cade) | ||
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| ## Get Data | ||
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| - uniprotxml_downloader was updated to [4ddc8da62671](https://toolshed.g2.bx.psu.edu/view/galaxyp/uniprotxml_downloader/4ddc8da62671) | ||
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| ## FASTA/FASTQ | ||
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| - gfastats was updated to [764f2516d837](https://toolshed.g2.bx.psu.edu/view/bgruening/gfastats/764f2516d837) | ||
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| ## Text Manipulation | ||
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| - diff was updated to [10ef1bf99074](https://toolshed.g2.bx.psu.edu/view/bgruening/diff/10ef1bf99074) | ||
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| ## None | ||
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| - data_manager_build_kraken2_database was updated to [8c533e19b697](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_build_kraken2_database/8c533e19b697) | ||
| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
| - data_manager_ncbi_fcs_gx_database_downloader was updated to [6be6e6198ac3](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_ncbi_fcs_gx_database_downloader/6be6e6198ac3) | ||
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| ## Genome Diversity | ||
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| - fasttree was updated to [ef46a404db96](https://toolshed.g2.bx.psu.edu/view/iuc/fasttree/ef46a404db96) | ||
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| ## Metagenomic Analysis | ||
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| - decontam was updated to [3f238ab9d200](https://toolshed.g2.bx.psu.edu/view/iuc/decontam/3f238ab9d200) | ||
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| ## Mothur | ||
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| - mothur_get_lineage was updated to [d1abc038d4bd](https://toolshed.g2.bx.psu.edu/view/iuc/mothur_get_lineage/d1abc038d4bd) | ||
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| ## Variant Calling | ||
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| - cnvkit_access was updated to [25bba7640b06](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_access/25bba7640b06) | ||
| - cnvkit_antitarget was updated to [dd54b5c36317](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_antitarget/dd54b5c36317) | ||
| - cnvkit_autobin was updated to [505e6bbaee59](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_autobin/505e6bbaee59) | ||
| - cnvkit_batch was updated to [97d2b6742760](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_batch/97d2b6742760) | ||
| - cnvkit_breaks was updated to [384fa596e5d9](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_breaks/384fa596e5d9) | ||
| - cnvkit_call was updated to [978ddcbedd60](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_call/978ddcbedd60) | ||
| - cnvkit_coverage was updated to [5699301a3bd1](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_coverage/5699301a3bd1) | ||
| - cnvkit_diagram was updated to [27ecb3477d34](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_diagram/27ecb3477d34) | ||
| - cnvkit_fix was updated to [49ecf6b6f9f4](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_fix/49ecf6b6f9f4) | ||
| - cnvkit_genemetrics was updated to [3e1d74c9e715](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_genemetrics/3e1d74c9e715) | ||
| - cnvkit_heatmap was updated to [26554a14f841](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_heatmap/26554a14f841) | ||
| - cnvkit_reference was updated to [b45fa373a972](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_reference/b45fa373a972) | ||
| - cnvkit_scatter was updated to [02446206f574](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_scatter/02446206f574) | ||
| - cnvkit_segment was updated to [33be231ce128](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_segment/33be231ce128) | ||
| - cnvkit_segmetrics was updated to [86392285203a](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_segmetrics/86392285203a) | ||
| - cnvkit_sex was updated to [0b34f56003dc](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_sex/0b34f56003dc) | ||
| - cnvkit_target was updated to [428b93a3acb4](https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_target/428b93a3acb4) | ||
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