Update doxygen.

Fixes #610.

chgres_cube/annotated.html

@@ -108,18 +108,21 @@
 <div class="textblock">Here are the data types with brief descriptions:</div><div class="directory">
 <div class="levels">[detail level <span onclick="javascript:toggleLevel(1);">1</span><span onclick="javascript:toggleLevel(2);">2</span>]</div><table class="directory">
 <tr id="row_0_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classatmosphere.html" target="_self">atmosphere</a></td><td class="desc">Process atmospheric fields </td></tr>
-<tr id="row_1_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="wam__climo__data_8f90.html#classgettemp__mod" target="_self">gettemp_mod</a></td><td class="desc">Use moduke for common blocks </td></tr>
-<tr id="row_2_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classgrib2__util.html" target="_self">grib2_util</a></td><td class="desc">Utilities for use when reading grib2 data </td></tr>
-<tr id="row_3_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classinput__data.html" target="_self">input_data</a></td><td class="desc">Read atmospheric, surface and nst data on the input grid </td></tr>
-<tr id="row_4_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classmodel__grid.html" target="_self">model_grid</a></td><td class="desc">Sets up the ESMF grid objects for the input data grid and target FV3 grid </td></tr>
-<tr id="row_5_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classprogram__setup.html" target="_self">program_setup</a></td><td class="desc">This module contains code to read the setup namelist file, handle the varmap file for GRIB2 data, and calculate the soil parameters </td></tr>
-<tr id="row_6_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classsearch__util.html" target="_self">search_util</a></td><td class="desc">Replace undefined values with a valid value </td></tr>
-<tr id="row_7_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classstatic__data.html" target="_self">static_data</a></td><td class="desc">Reads static surface climatological data for the target FV3 grid (such as soil type and vegetation type) </td></tr>
-<tr id="row_8_" class="even"><td class="entry"><img id="arr_8_" src="ftv2mnode.png" alt="o" width="16" height="22" onclick="toggleFolder('8_')"/><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classsurface.html" target="_self">surface</a></td><td class="desc">Process surface and nst fields </td></tr>
-<tr id="row_8_0_"><td class="entry"><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structsurface_1_1realptr__2d.html" target="_self">realptr_2d</a></td><td class="desc"></td></tr>
-<tr id="row_8_1_" class="even"><td class="entry"><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structsurface_1_1realptr__3d.html" target="_self">realptr_3d</a></td><td class="desc"></td></tr>
-<tr id="row_9_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classthompson__mp__climo__data.html" target="_self">thompson_mp_climo_data</a></td><td class="desc">Module to read the Thompson climatological MP data file and set up the associated esmf field and grid objects </td></tr>
-<tr id="row_10_" class="even"><td class="entry"><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="wam__climo__data_8f90.html#classwam__gtd7bk__mod" target="_self">wam_gtd7bk_mod</a></td><td class="desc">Use moduke for blockdata gtd7bk </td></tr>
+<tr id="row_1_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classatmosphere__target__data.html" target="_self">atmosphere_target_data</a></td><td class="desc">Module to hold variables and ESMF fields associated with the target grid atmospheric data </td></tr>
+<tr id="row_2_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="wam__climo__data_8f90.html#classgettemp__mod" target="_self">gettemp_mod</a></td><td class="desc">Use moduke for common blocks </td></tr>
+<tr id="row_3_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classgrib2__util.html" target="_self">grib2_util</a></td><td class="desc">Utilities for use when reading grib2 data </td></tr>
+<tr id="row_4_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classinput__data.html" target="_self">input_data</a></td><td class="desc">Read atmospheric, surface and nst data on the input grid </td></tr>
+<tr id="row_5_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classmodel__grid.html" target="_self">model_grid</a></td><td class="desc">Sets up the ESMF grid objects for the input data grid and target FV3 grid </td></tr>
+<tr id="row_6_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classprogram__setup.html" target="_self">program_setup</a></td><td class="desc">This module contains code to read the setup namelist file, handle the varmap file for GRIB2 data, and calculate the soil parameters </td></tr>
+<tr id="row_7_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classsearch__util.html" target="_self">search_util</a></td><td class="desc">Replace undefined values with a valid value </td></tr>
+<tr id="row_8_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classstatic__data.html" target="_self">static_data</a></td><td class="desc">Reads static surface climatological data for the target FV3 grid (such as soil type and vegetation type) </td></tr>
+<tr id="row_9_"><td class="entry"><img id="arr_9_" src="ftv2mnode.png" alt="o" width="16" height="22" onclick="toggleFolder('9_')"/><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classsurface.html" target="_self">surface</a></td><td class="desc">Process surface and nst fields </td></tr>
+<tr id="row_9_0_" class="even"><td class="entry"><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structsurface_1_1realptr__2d.html" target="_self">realptr_2d</a></td><td class="desc"></td></tr>
+<tr id="row_9_1_"><td class="entry"><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="structsurface_1_1realptr__3d.html" target="_self">realptr_3d</a></td><td class="desc"></td></tr>
+<tr id="row_10_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classsurface__target__data.html" target="_self">surface_target_data</a></td><td class="desc">Module to hold ESMF fields associated with the target grid surface data </td></tr>
+<tr id="row_11_"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classthompson__mp__climo__data.html" target="_self">thompson_mp_climo_data</a></td><td class="desc">Module to read the Thompson climatological MP data file and set up the associated esmf field and grid objects </td></tr>
+<tr id="row_12_" class="even"><td class="entry"><img src="ftv2node.png" alt="o" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="wam__climo__data_8f90.html#classwam__gtd7bk__mod" target="_self">wam_gtd7bk_mod</a></td><td class="desc">Use moduke for blockdata gtd7bk </td></tr>
+<tr id="row_13_"><td class="entry"><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><img src="ftv2cl.png" alt="C" width="24" height="22" /><a class="el" href="classwrite__data.html" target="_self">write_data</a></td><td class="desc"></td></tr>
 </table>
 </div><!-- directory -->
 </div><!-- contents -->

chgres_cube/annotated.js

@@ -1,6 +1,7 @@
 var annotated =
 [
     [ "atmosphere", "classatmosphere.html", "classatmosphere" ],
+    [ "atmosphere_target_data", "classatmosphere__target__data.html", "classatmosphere__target__data" ],
     [ "gettemp_mod", "wam__climo__data_8f90.html#classgettemp__mod", "wam__climo__data_8f90" ],
     [ "grib2_util", "classgrib2__util.html", "classgrib2__util" ],
     [ "input_data", "classinput__data.html", "classinput__data" ],
@@ -9,6 +10,8 @@ var annotated =
     [ "search_util", "classsearch__util.html", "classsearch__util" ],
     [ "static_data", "classstatic__data.html", "classstatic__data" ],
     [ "surface", "classsurface.html", "classsurface" ],
+    [ "surface_target_data", "classsurface__target__data.html", "classsurface__target__data" ],
     [ "thompson_mp_climo_data", "classthompson__mp__climo__data.html", "classthompson__mp__climo__data" ],
-    [ "wam_gtd7bk_mod", "wam__climo__data_8f90.html#classwam__gtd7bk__mod", "wam__climo__data_8f90" ]
+    [ "wam_gtd7bk_mod", "wam__climo__data_8f90.html#classwam__gtd7bk__mod", "wam__climo__data_8f90" ],
+    [ "write_data", "classwrite__data.html", "classwrite__data" ]
 ];

chgres_cube/atmosphere_8F90.html

@@ -4,7 +4,7 @@
 <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
 <meta name="generator" content="Doxygen 1.8.5"/>
-<title>chgres_cube: /gpfs/dell2/emc/modeling/noscrub/George.Gayno/ufs_utils.git/UFS_UTILS.upstream/UFS_UTILS/sorc/chgres_cube.fd/atmosphere.F90 File Reference</title>
+<title>chgres_cube: /gpfs/dell2/emc/modeling/noscrub/George.Gayno/ufs_utils.git/UFS_UTILS.upstream/sorc/chgres_cube.fd/atmosphere.F90 File Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
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