Upgrade all of the python packages #5
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name: InterMine WS Python CI | |
on: | |
push: | |
pull_request: | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
services: | |
# Label used to access the service container | |
postgres: | |
image: postgres:13 | |
env: | |
POSTGRES_USER: postgres | |
POSTGRES_PASSWORD: postgres | |
options: >- | |
--health-cmd pg_isready | |
--health-interval 10s | |
--health-timeout 5s | |
--health-retries 5 | |
ports: | |
- 5432/tcp | |
env: | |
TESTMODEL_URL: http://localhost:8080/intermine-demo | |
TESTMODEL_PATH: intermine-demo | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up python 3.10 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.10' | |
- name: Install dependencies | |
run: | | |
set -euxo pipefail | |
sudo apt-get install libxml2-dev libxslt-dev python3-dev | |
python -m pip install --upgrade pip | |
pip install -U setuptools | |
pip install -r requirements.txt | |
- name: Install PostgreSQL client | |
run: | | |
set -euxo pipefail | |
sudo apt-get update -y | |
sudo apt-get install -y libpq-dev postgresql-client | |
sudo service postgresql start | |
- name: Run unit tests | |
run: | | |
set -euxo pipefail | |
./config/ci/init-solr.sh && ./config/ci/init.sh && python setup.py test && python setup.py livetest |