Error: buildah exited with code 1 Trying to pull quay.io/cdis/jupyter-superslim-r:2.0.0... Getting image source signatures Copying blob sha256:543e8de9a941082ac6b3d803c50b7446db75d664ba4266cba0234b68c7af8e7a Copying blob sha256:28c0497144f163245c32e289f5afe6d15b7db6bfd32dfc44bd3d0c0aea5275b2 Copying blob sha256:16ec32c2132b43494832a05f2b02f7a822479f8250c173d0ab27b3de78b2f058 Copying blob sha256:9e44e0d0d619071ed96cbced26b27f8a3c812519c392589b196820713d5a28f4 Copying blob sha256:70469aed0da36533dabac7820a83a502e56b73f9b22c5bedb9c93e409f409a84 Copying blob sha256:118def5f782d9771fe52e86dad12d93f680b883483147f9fc8cfaf1f1eb8df2a Copying blob sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1 Copying blob sha256:5f4826361c84af6af087ca62dd0492e692cf199b6947fb6491f33411d0346587 Copying blob sha256:e65cb2fe199910cd7cdf07b6c5cfd89ebd95f08730dbfd17253f752e288c2297 Copying blob sha256:74dddc024b0491e8505d0cb9f260760d18dba5efb8b0a04ec307c3b6cd67a987 Copying blob sha256:06059c46db66b8f6c70833ff194ba10f2e10431877e8ea1fd05defd6440a7f5b Copying blob sha256:064e7f78481fc012af717148c68fabccd80197a043d3acd20623579b6af910fa Copying blob sha256:626018fa3d35adf4bc8a7329f0c6337bba9bd1b41266f49ad2b8f5a59ab303b4 Copying blob sha256:32503540038fb7d4320cb3e3ba7d191833351397a773874f9dcb7b531d11bea6 Copying blob sha256:8f58f4e498ad73ece5ae7acf89b735b446a0ca40758af99d36f013816736bc4e Copying blob sha256:eddcde09331e406923bc927a8c33c3996b2002d91f6bc2d5eb7790af5e0699fc Copying blob sha256:be66554c80be5d3e57d036ae173f6f92c9e03c0413b0639dc03744e29a79c7a8 Copying blob sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1 Copying config sha256:03a5c570a158c267ad58f39098995a162d97f3e11e340585679e345b31141191 Writing manifest to image destination ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. jupyterlab 4.2.5 requires httpx>=0.25.0, but you have httpx 0.23.3 which is incompatible. Warning: 'conda-forge' already in 'channels' list, moving to the bottom ==> WARNING: A newer version of conda exists. <== current version: 24.7.1 latest version: 25.1.0 Please update conda by running $ conda update -n base -c conda-forge conda ==> WARNING: A newer version of conda exists. <== current version: 24.7.1 latest version: 25.1.0 Please update conda by running $ conda update -n base -c conda-forge conda ==> WARNING: A newer version of conda exists. <== current version: 24.7.1 latest version: 25.1.0 Please update conda by running $ conda update -n base -c conda-forge conda Error in loadNamespace(x) : there is no package called ‘BiocManager’ Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Error: building at STEP "RUN R -e "BiocManager::install('DESeq2')"": while running runtime: exit status 1

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/