BDCat staging release 1675275499

staging.gen3.biodatacatalyst.nhlbi.nih.gov/manifest.json

@@ -7,30 +7,30 @@
     "autodeploy": "yes"
   },
   "versions": {
-    "access-backend": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/access-backend:2022.10",
-    "arborist": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/arborist:2022.10",
-    "audit-service": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/audit-service:2022.10",
-    "awshelper": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/awshelper:2022.10",
+    "access-backend": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/access-backend:2023.02",
+    "arborist": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/arborist:2023.02",
+    "audit-service": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/audit-service:2023.02",
+    "awshelper": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/awshelper:2023.02",
     "aws-es-proxy": "quay.io/cdis/aws-es-proxy:0.8",
-    "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:2022.10",
-    "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2022.10",
-    "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2022.10",
-    "pidgin": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pidgin:2022.10",
-    "revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:2022.10",
-    "sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:2022.10",
-    "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2022.10",
-    "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:2022.10",
+    "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:2023.02",
+    "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2023.02",
+    "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2023.02",
+    "pidgin": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pidgin:2023.02",
+    "revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:2023.02",
+    "sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:2023.02",
+    "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2023.02",
+    "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:5.3.0",
     "fluentd": "fluent/fluentd-kubernetes-daemonset:v1.2-debian-cloudwatch",
-    "spark": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-spark:2022.10",
-    "tube": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/tube:0.7.0",
-    "guppy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/guppy:2022.10",
-    "sower": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sower:2022.10",
-    "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:2022.10",
+    "spark": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-spark:2023.02",
+    "tube": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/tube:2023.02",
+    "guppy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/guppy:2023.02",
+    "sower": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sower:2023.02",
+    "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:2023.02",
     "ambassador": "quay.io/datawire/ambassador:1.4.2",
-    "wts": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/workspace-token-service:2022.10",
-    "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2022.10",
-    "ssjdispatcher": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ssjdispatcher:2022.10",
-    "dashboard": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-statics:2022.10"
+    "wts": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/workspace-token-service:2023.02",
+    "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2023.02",
+    "ssjdispatcher": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ssjdispatcher:2023.02",
+    "dashboard": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-statics:2023.02"
   },
   "google": {
     "enabled": "yes"
@@ -40,7 +40,7 @@
   },
   "ssjdispatcher": {
     "job_images": {
-      "indexing": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexs3client:2022.10"
+      "indexing": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexs3client:2023.02"
     }
   },
   "arborist": {
@@ -52,7 +52,7 @@
       "action": "export",
       "container": {
         "name": "job-task",
-        "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pelican-export:2022.10",
+        "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pelican-export:2023.02",
         "pull_policy": "Always",
         "env": [
           {
@@ -117,7 +117,7 @@
       "action": "export-files",
       "container": {
         "name": "job-task",
-        "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pelican-export:2022.10",
+        "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pelican-export:2023.02",
         "pull_policy": "Always",
         "env": [
           {
@@ -187,7 +187,7 @@
       "serviceAccountName": "jobs-staging-gen3-biodatacatalyst-nhlbi-nih-gov",
       "container": {
         "name": "job-task",
-        "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifest-indexing:2022.10",
+        "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifest-indexing:2023.02",
         "pull_policy": "Always",
         "env": [
           {
@@ -228,7 +228,7 @@
       "serviceAccountName": "jobs-preprod-gen3-biodatacatalyst-nhlbi-nih-gov",
       "container": {
         "name": "job-task",
-        "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/download-indexd-manifest:2022.10",
+        "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/download-indexd-manifest:2023.02",
         "pull_policy": "Always",
         "env": [
           {
@@ -301,9 +301,9 @@
     "tier_access_limit": 50,
     "dispatcher_job_num": "10",
     "netpolicy": "on",
-    "dd_enabled": null,
     "argocd": "true",
-    "waf_enabled": "true"
+    "waf_enabled": "true",
+    "dd_enabled": null
   },
   "canary": {
     "default": 0

staging.gen3.biodatacatalyst.nhlbi.nih.gov/manifests/hatchery/hatchery.json

@@ -5,7 +5,7 @@
   "sidecar": {
     "cpu-limit": "1.0",
     "memory-limit": "256Mi",
-    "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3fuse-sidecar:2022.10",
+    "image": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3fuse-sidecar:2023.02",
     "env": {
       "NAMESPACE": "default",
       "HOSTNAME": "staging.gen3.biodatacatalyst.nhlbi.nih.gov"

staging.gen3.biodatacatalyst.nhlbi.nih.gov/portal/gitops.json

@@ -644,13 +644,33 @@
         "enabled": false,
         "text": "Study Discovery"
       },
+      "tagsColumn": {
+        "enabled": false
+      },
+      "tagsInDescription": {
+        "enabled": true
+      },
       "search": {
         "searchBar": {
           "enabled": true
+        },
+        "tagSearchDropdown": {
+          "enabled": true,
+          "collapsibleButtonText": "Study Filters"
         }
       },
       "authorization": {
-        "enabled": true
+        "enabled": true,
+        "supportedValues": {
+          "accessible": {
+            "enabled": true,
+            "menuText": "Accessible"
+          },
+          "unaccessible": {
+            "enabled": true,
+            "menuText": "Not Accessible"
+          }
+        }
       }
     },
     "aggregations": [
@@ -666,7 +686,8 @@
       }
     ],
     "tagSelector": {
-      "title": "Tags by category"
+      "title": "Tags by category",
+      "showTagCategoryNames": true
     },
     "studyColumns": [
       {
@@ -676,6 +697,8 @@
       {
         "name": "Full Name",
         "field": "full_name",
+        "errorIfNotAvailable": false,
+        "valueIfNotAvailable": "",
         "contentType": "string"
       },
       {
@@ -688,6 +711,12 @@
       {
         "name": "dbGaP Accession Number",
         "field": "study_id"
+      },
+      {
+        "name": "Released",
+        "field": "released",
+        "errorIfNotAvailable": false,
+        "valueIfNotAvailable": "n/a"
       }
     ],
     "studyPreviewField": {
@@ -755,6 +784,91 @@
         }
       ]
     },
+    "detailView": {
+      "headerField": "project_id",
+      "tabs": [
+        {
+          "tabName": "Study",
+          "groups": [
+            {
+              "header": "Study Information",
+              "fields": [
+                {
+                  "type": "text",
+                  "label": "Full Name:",
+                  "sourceField": "full_name",
+                  "default": "Not specified"
+                },
+                {
+                  "type": "text",
+                  "label": "Short Name:",
+                  "sourceField": "short_name",
+                  "default": "Not specified"
+                },
+                {
+                  "type": "text",
+                  "label": "Number Of Subjects:",
+                  "sourceField": "_subjects_count",
+                  "default": "Not specified"
+                },
+                {
+                  "type": "text",
+                  "label": "dbGaP Accession Number:",
+                  "sourceField": "dbgap_accession",
+                  "default": "Not specified"
+                },
+                {
+                  "type": "link",
+                  "label": "dbGaP URL:",
+                  "sourceField": "dbgap_url",
+                  "default": "Not specified"
+                },
+                {
+                  "type": "text",
+                  "label": "Released:",
+                  "sourceField": "released",
+                  "default": "Not specified"
+                },
+                {
+                  "type": "tags"
+                }
+              ]
+            },
+            {
+              "header": "Study Description",
+              "fields": [
+                {
+                  "type": "block",
+                  "sourceField": "study_description"
+                }
+              ]
+            }
+          ]
+        },
+        {
+          "tabName": "Access",
+          "groups": [
+            {
+              "fields": [
+                {
+                  "type": "accessDescriptor"
+                }
+              ]
+            },
+            {
+              "header": "Study Access",
+              "fields": [
+                {
+                  "type": "text",
+                  "sourceField": "study_data_requires_access_request",
+                  "label": "Study Data Requires Access Request"
+                }
+              ]
+            }
+          ]
+        }
+      ]
+    },
     "minimalFieldMapping": {
       "tagsListFieldName": "tags",
       "authzField": "authz",