Skip to content

Commit

Permalink
Merge branch 'master' into chore/apply_202208_to_nci-crdc_datacommons…
Browse files Browse the repository at this point in the history
…_io_1658867020
  • Loading branch information
atharvar28 authored Aug 25, 2022
2 parents cbf246e + 7aecf24 commit e5673ec
Show file tree
Hide file tree
Showing 323 changed files with 1,414,058 additions and 31,861 deletions.
1,082 changes: 466 additions & 616 deletions .secrets.baseline

Large diffs are not rendered by default.

4 changes: 2 additions & 2 deletions CODEOWNERS
Original file line number Diff line number Diff line change
Expand Up @@ -44,8 +44,8 @@ accessclinicaldata.niaid.nih.gov @hughestr @uc-cdis/planx-qa

gen3.datacommons.io @trevars @cgmeyer @uc-cdis/planx-qa

portal.occ-data.org @Mikisha10 @uc-cdis/planx-qa
data.bloodpac.org @Mikisha10 @uc-cdis/planx-qa
portal.occ-data.org @Mikisha10 @uc-cdis/planx-qa @urvi-occ @divyaocc
data.bloodpac.org @Mikisha10 @uc-cdis/planx-qa @urvi-occ @divyaocc

healdata.org @hughestr @uc-cdis/planx-qa
preprod.healdata.org @hughestr @uc-cdis/planx-qa
Expand Down
4 changes: 2 additions & 2 deletions accessclinicaldata.niaid.nih.gov/manifest.json
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@
"pidgin": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pidgin:2022.07",
"revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:2022.07",
"sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:2022.07",
"portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:2022.07",
"portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:3.29.1",
"tube": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/tube:2022.07",
"fluentd": "fluent/fluentd-kubernetes-daemonset:v1.2-debian-cloudwatch",
"spark": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-spark:2022.07",
Expand All @@ -37,7 +37,7 @@
"global": {
"environment": "niaiddata",
"hostname": "accessclinicaldata.niaid.nih.gov",
"revproxy_arn": "arn:aws:acm:us-east-1:636151780898:certificate/61c84d3f-f5bb-4bb4-a90b-8b50216580ee",
"revproxy_arn": "arn:aws:iam::636151780898:server-certificate/accessclinical-2023",
"dictionary_url": "https://s3.amazonaws.com/dictionary-artifacts/niaid-clinical-trials-dictionary/0.5.3/schema.json",
"portal_app": "gitops",
"kube_bucket": "kube-niaiddata-gen3",
Expand Down
6 changes: 4 additions & 2 deletions accessclinicaldata.niaid.nih.gov/portal/gitops.json
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@
"heading": "Accessing NIAID Clinical Trials Data",
"multiLineTexts": [
"AccessClinicalData@NIAID is a NIAID cloud-based, secure data platform that enables sharing of and access to reports and data sets from NIAID COVID-19 and other sponsored clinical trials for the basic and clinical research community.",
"<strong>Updates:</strong><ul><li>Dataset for Adaptive COVID-19 Treatment Trial 4 (<a href='/study-viewer/clinical_trials/NCT04640168'>ACTT-4</a>) is now available</li><li>Dataset for Adaptive COVID-19 Treatment Trial 3 (<a href='/study-viewer/clinical_trials/NCT04492475'>ACTT-3</a>) is now available</li><li>Updated datasets for Adaptive COVID-19 Treatment Trials 1 & 2 (<a href='/study-viewer/clinical_trials/ACTT'>ACTT-1</a> and <a href='/study-viewer/clinical_trials/NCT04401579'>ACTT-2</a>) are now available</li></ul>",
"<strong>Updates:</strong><ul><li>Dataset for IMPACC - A Prospective Cohort Study to Assess Longitudinal Immune Responses in Hospitalized Patients with COVID-19 (<a href='/study-viewer/clinical_trials/SDY1760'>SDY1760</a>) is now available</li><li>Dataset for Adaptive COVID-19 Treatment Trial 4 (<a href='/study-viewer/clinical_trials/NCT04640168'>ACTT-4</a>) is now available</li><li>Dataset for Adaptive COVID-19 Treatment Trial 3 (<a href='/study-viewer/clinical_trials/NCT04492475'>ACTT-3</a>) is now available</li><li>Updated datasets for Adaptive COVID-19 Treatment Trials 1 & 2 (<a href='/study-viewer/clinical_trials/ACTT'>ACTT-1</a> and <a href='/study-viewer/clinical_trials/NCT04401579'>ACTT-2</a>) are now available</li></ul>",
"<b>How to View Available Data</b>",
"Go to <a href='https://accessclinicaldata.niaid.nih.gov/study-viewer/clinical_trials'>View Clinical Trials</a>. For each study listed, open the details and select the \"Learn More\" button to review a description of the clinical trial and data dictionary.",
"<b>How to Request Data</b>",
Expand Down Expand Up @@ -131,10 +131,12 @@
"defaultOrderBy": ["title", "asc"],
"buttons": [
{
"type": "download"
"type": "download",
"overrideUrlField": "external_url"
},
{
"type": "request_access",
"requiredIdpField": "required_idp",
"resourceDisplayNameField": "title",
"redirectModalText": "the NIAID Data Access Request Form",
"singleItemView": false,
Expand Down
Loading

0 comments on commit e5673ec

Please sign in to comment.