-
Notifications
You must be signed in to change notification settings - Fork 9
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
nightly build 02-20-2025, using gen3.biodatacatalyst.nhlbi.nih.gov
- Loading branch information
1 parent
3acd36d
commit 7514ae2
Showing
8 changed files
with
1,397 additions
and
1,021 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,54 +1,155 @@ | ||
| mappings: | ||
| - name: bloodpac | ||
| doc_type: case | ||
| - name: gen3.biodatacatalyst.nhlbi.nih.gov_subject | ||
| doc_type: subject | ||
| type: aggregator | ||
| root: case | ||
| root: subject | ||
| props: | ||
| - name: submitter_id | ||
| - name: project_id | ||
| - name: consent_codes | ||
| - name: geographic_site | ||
| flatten_props: | ||
| - path: demographics | ||
| props: | ||
| - name: gender | ||
| - name: race | ||
| - name: ethnicity | ||
| - name: age_at_index | ||
| - name: hispanic_subgroup | ||
| - name: subcohort | ||
| - name: weight_baseline | ||
| - name: bmi_baseline | ||
| - name: height_baseline | ||
| - path: medical_histories | ||
| props: | ||
| - name: diabetes | ||
| - name: hypertension | ||
| - name: cerebrovascular_disease | ||
| - name: chronic_respiratory_disease | ||
| - name: coronary_artery_disease | ||
| - name: asthma | ||
| - name: cabg_presence | ||
| - name: copd | ||
| - name: emphysema | ||
| - name: heart_failure | ||
| - name: myocardial_infarction | ||
| - name: stroke | ||
| - name: cac_score | ||
| - name: cac_volume | ||
| - name: carotid_plaque | ||
| - name: carotid_stenosis | ||
| - name: cimt_1 | ||
| - name: cimt_2 | ||
| - name: vte_case_status | ||
| - name: vte_followup_start_age | ||
| - name: vte_prior_history | ||
|
|
||
| - path: medication_records | ||
| props: | ||
| - name: hypertension_meds | ||
| - name: antihypertensive_meds | ||
| - name: fasting_lipids | ||
| - name: lipid_lowering_medication | ||
| - path: lab_results | ||
| props: | ||
| - name: lymphocyte_ncnc_bld | ||
| - name: mch_entmass_rbc | ||
| - name: mcv_entvol_rbc | ||
| - name: mchc_mcnc_rbc | ||
| - name: monocyte_ncnc_bld | ||
| - name: neutrophil_ncnc_bld | ||
| - name: pmv_entvol_bld | ||
| - name: rbc_ncnc_bld | ||
| - name: rdw_ratio_rbc | ||
| - name: hemoglobin_mcnc_bld | ||
| - name: platelet_ncnc_bld | ||
| - name: hematocrit_vfr_bld | ||
| - name: wbc_ncnc_bld | ||
| - name: basophil_ncnc_bld | ||
| - name: eosinophil_ncnc_bld | ||
| - name: unit_triglycerides | ||
| - name: hdl | ||
| - name: ldl | ||
| - name: triglycerides | ||
| - name: total_cholesterol | ||
| aggregated_props: | ||
| - name: _biospecimens_count | ||
| path: biospecimens | ||
| fn: count | ||
| - name: annotated_sex | ||
| path: demographics | ||
| src: annotated_sex | ||
| fn: set | ||
| - name: race | ||
| path: demographics | ||
| src: race | ||
| fn: set | ||
| - name: ethnicity | ||
| path: demographics | ||
| src: ethnicity | ||
| fn: set | ||
| - name: _samples_count | ||
| path: biospecimens.samples | ||
| path: samples | ||
| fn: count | ||
| - name: _aliquots_count | ||
| path: biospecimens.samples.aliquots | ||
| fn: count | ||
| - name: _analytes_count | ||
| path: biospecimens.samples.aliquots.analytes | ||
| fn: count | ||
| - name: _cell_images_count | ||
| path: biospecimens.samples.aliquots.analytes.cell_images | ||
| fn: count | ||
| - name: _mass_cytometry_assays_count | ||
| path: biospecimens.samples.aliquots.analytes.mass_cytometry_assays | ||
| fn: count | ||
| - name: _mass_cytometry_images_count | ||
| path: biospecimens.samples.aliquots.analytes.mass_cytometry_assays.mass_cytometry_images | ||
| path: samples.aliquots | ||
| fn: count | ||
| - name: _read_groups_count | ||
| path: biospecimens.samples.aliquots.analytes.read_groups | ||
| path: samples.aliquots.read_groups | ||
| fn: count | ||
| - name: _slide_images_count | ||
| path: biospecimens.samples.aliquots.slide_images | ||
| - name: _submitted_unaligned_reads_files_count | ||
| path: samples.aliquots.read_groups.submitted_unaligned_reads_files | ||
| fn: count | ||
| - name: _submitted_aligned_reads_files_count | ||
| path: biospecimens.samples.aliquots.analytes.read_groups.submitted_aligned_reads_files | ||
| fn: count | ||
| - name: _submitted_methylations_count | ||
| path: biospecimens.samples.aliquots.analytes.submitted_methylation_files | ||
| path: samples.aliquots.read_groups.submitted_aligned_reads_files | ||
| fn: count | ||
| - name: _submitted_somatic_mutations_count | ||
| path: biospecimens.samples.aliquots.analytes.read_groups.submitted_somatic_mutations | ||
| fn: count | ||
| - name: _submitted_unaligned_reads_files_count | ||
| path: biospecimens.samples.aliquots.analytes.read_groups.submitted_unaligned_reads_files | ||
| - name: _simple_germline_variations_count | ||
| path: samples.aliquots.read_groups.simple_germline_variations | ||
| fn: count | ||
| - name: current_smoker_baseline | ||
| path: exposures | ||
| src: current_smoker_baseline | ||
| fn: set | ||
| - name: ever_smoker_baseline | ||
| path: exposures | ||
| src: ever_smoker_baseline | ||
| fn: set | ||
| parent_props: | ||
| - path: studies[studies_submitter_id:submitter_id].projects[code] | ||
| - path: studies[studies_submitter_id:submitter_id].projects[code].programs[programs_name:name] | ||
| joining_props: | ||
| - index: file | ||
| join_on: _subject_id | ||
| props: | ||
| - name: data_format | ||
| src: data_format | ||
| fn: set | ||
| - name: data_type | ||
| src: data_type | ||
| fn: set | ||
| - name: file_count | ||
| src: _file_id | ||
| fn: count | ||
| - name: gen3.biodatacatalyst.nhlbi.nih.gov_file | ||
| doc_type: file | ||
| type: collector | ||
| root: None | ||
| category: data_file | ||
| props: | ||
| - name: object_id | ||
| - name: md5sum | ||
| - name: file_name | ||
| - name: file_size | ||
| - name: data_category | ||
| - name: data_format | ||
| - name: data_type | ||
| - name: state | ||
| - name: callset | ||
| - name: bucket_path | ||
| - name: source_node | ||
| injecting_props: | ||
| subject: | ||
| props: | ||
| - name: _subject_id | ||
| src: id | ||
| fn: set | ||
| - name: project_id | ||
| program: | ||
| props: | ||
| - name: programs_name | ||
| src: name | ||
| fn: set |
Oops, something went wrong.