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Trilinos Master Merge PR Generator: Auto PR created to promote from master_merge_20210908_000545 branch to master #9673

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merged 96 commits into from
Sep 8, 2021
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358897d
Tpetra: Remove Distributor from pack/unpack interfaces
tasmith4 Aug 14, 2021
6dc9c66
Ifpack2: update usage of the Tpetra matrix pack API
tasmith4 Aug 16, 2021
11aadcc
Tpetra: Remove Distributor from pack/unpack interfaces
tasmith4 Aug 14, 2021
dd824dd
Ifpack2: update usage of the Tpetra matrix pack API
tasmith4 Aug 16, 2021
6149ac5
Add a temporary method to Distributor to get the Plan for things that…
tasmith4 Aug 14, 2021
e630cab
Tpetra: Add DistributorActor to DistObject
tasmith4 Aug 16, 2021
c29a8a2
Tpetra: delete distributor arg from DistObject pack/unpack helpers
tasmith4 Aug 16, 2021
13b7ede
Tpetra: DistObject's doPosts/Waits take a Plan and use the local actor
tasmith4 Aug 16, 2021
d302baf
TrilinosCouplings: Hook up Stratimikos-Ifpack2 in Tpetra Maxwell example
cgcgcg Aug 20, 2021
5c2c51e
MueLu: Fixes for distributed classical
cgcgcg Aug 20, 2021
2724676
TrilinosCouplings: Add stacked timer to Maxwell Tpetra example
cgcgcg Aug 20, 2021
a489ff0
Xpetra IO: Fix warning
cgcgcg Aug 20, 2021
79fc92a
MueLu: Enable rebalancing of "BlockNumber"
cgcgcg Aug 20, 2021
8e1016a
MueLu CoalesceDropFactory: Add symmetrization of coloring graph
cgcgcg Aug 22, 2021
6bbd3bb
Tpetra: Add CrsGraphTransposer
cgcgcg Aug 22, 2021
629659a
Tpetra: Fix some timer names
cgcgcg Aug 22, 2021
362f274
Tpetra: take reverseOption out of DistObject::doWaits
tasmith4 Aug 23, 2021
e0f107c
Tpetra: take reverseOption out of DistObject::doPosts
tasmith4 Aug 23, 2021
8d4b75c
Tpetra: Add unit test for CrsGraphTransposer
cgcgcg Aug 23, 2021
f8e2da2
Tpetra: Remove dead code from RowMatrixTransposer unit test
cgcgcg Aug 23, 2021
0b001c3
Fixed up workset builder for UVM
Aug 24, 2021
8538ff5
Return the state of the ROL algorithm
kliegeois Aug 24, 2021
fdb596e
Merge Pull Request #9596 from cgcgcg/Trilinos/mlDefaults
trilinos-autotester Aug 25, 2021
a67b56e
MueLu: collect region MG solver stuff in one file
mayrmt Aug 25, 2021
bac93aa
MueLu: Re-fix ML2MueLuTranslator
cgcgcg Aug 25, 2021
7f7cdbe
MueLu: move region MG vCycle to "solve" file
mayrmt Aug 25, 2021
040954d
Merge Pull Request #9613 from mayrmt/Trilinos/muelu-region-mg-solve
trilinos-autotester Aug 25, 2021
b609a04
Fix Panzer's projection and ip_coordinates tests with UVM off (#9614)
JacobDomagala Aug 25, 2021
6dfadb2
panzer: Main driver1 uvm free for tpetra blocked (#9603)
bathmatt Aug 25, 2021
68eea20
Merge remote-tracking branch 'origin/develop' into panzer-orientations
Aug 25, 2021
2549b18
Merge Pull Request #9609 from trilinos/Trilinos/panzer-orientations
trilinos-autotester Aug 25, 2021
c2a27a8
Panzer epetra scatter (#9581)
bathmatt Aug 25, 2021
b6b992a
This resolves some cmake/std paths to the new packages/framework/pr_t…
prwolfe Aug 26, 2021
4bdf695
Remove an outdated file that should not have been copied from the old…
prwolfe Aug 26, 2021
0b978e8
Fix Panzer's tests and examples with UVM off (#9618)
JacobDomagala Aug 26, 2021
1c68dc2
fixed parameter evaluator to run in parallel
Aug 26, 2021
94e7f7f
Fixed missing fence
Aug 26, 2021
679a955
Merge Pull Request #9620 from trilinos/Trilinos/panzer-parameter
trilinos-autotester Aug 26, 2021
253bb95
conversions for UVM removal
Aug 26, 2021
c125338
Merge Pull Request #9621 from trilinos/Trilinos/panzer-neumann
trilinos-autotester Aug 26, 2021
91f52cd
got poisson example UVM free
Aug 26, 2021
62329c2
Merge Pull Request #9624 from trilinos/Trilinos/panzer-poisson-example
trilinos-autotester Aug 26, 2021
bc20b5d
got through discrete curl and grad
Aug 27, 2021
e72baf2
Fixed up some view of view errors
Aug 27, 2021
c76c189
Merge Pull Request #9567 from trilinos/Trilinos/tasmit/remove-distrib…
trilinos-autotester Aug 27, 2021
1b009a4
Merge Pull Request #9605 from trilinos/Trilinos/tasmit/distobject-loc…
trilinos-autotester Aug 27, 2021
fad7acf
Merge Pull Request #9619 from prwolfe/Trilinos/reset_boostrap_code_path
trilinos-autotester Aug 30, 2021
ce6798b
have test updated partially
Aug 30, 2021
0a650b2
have some of gather soln working
Aug 30, 2021
137445e
have some of gather tan working
Aug 30, 2021
fba1ecf
Fixed one unit test
Aug 30, 2021
3faef8b
completed conversion
Aug 30, 2021
7d22199
Automatic snapshot commit from seacas at f2312cbcb8
gsjaardema Aug 30, 2021
afb7217
STK: Snapshot 08-30-21 17:23
alanw0 Aug 30, 2021
9323eee
Merge Pull Request #9633 from trilinos/Trilinos/stk-snapshot
trilinos-autotester Aug 31, 2021
87901d9
Update for recent seacas changes
gdsjaar Aug 31, 2021
b0a149e
IOSS: fixes for build/test
gsjaardema Aug 31, 2021
5002f8f
have more examples running
Aug 31, 2021
0e60079
Merge Pull Request #9632 from trilinos/Trilinos/tangent-gather
trilinos-autotester Aug 31, 2021
abf3522
Merge Pull Request #9637 from trilinos/Trilinos/panzer-example
trilinos-autotester Aug 31, 2021
049b079
Merge Pull Request #9634 from gsjaardema/Trilinos/seacas-snapshot-202…
trilinos-autotester Aug 31, 2021
018284d
Ifpack2 Chebyshev: Add "cg" option for "eigen-analysis: type"
cgcgcg Aug 27, 2021
02ee4aa
Ifpack2 Chebyshev: unit test computation of spectral radius
cgcgcg Aug 31, 2021
0b30ff3
MueLu ML2MueLuTranslator: Convert "eigen-analysis: type" for Chebyshev
cgcgcg Aug 31, 2021
c9148be
MueLu: Rebase gold files
cgcgcg Aug 31, 2021
a24500e
Merge Pull Request #9627 from cgcgcg/Trilinos/mlDefaults
trilinos-autotester Sep 1, 2021
65fc34e
Fix PanzerAdaptersSTK_tScatterResidual_MPI_2 and PanzerAdaptersSTK_t…
JacobDomagala Sep 2, 2021
f5d9fa3
have mesh motion test passing
Sep 2, 2021
8a51e65
Fix PanzerAdaptersSTK_STK_ResponseLibraryTest2_MPI_2 with UVM off
JacobDomagala Sep 2, 2021
676c7e0
Merge Pull Request #9649 from kliegeois/Trilinos/piro
trilinos-autotester Sep 2, 2021
d366642
Merge Pull Request #9650 from trilinos/Trilinos/panzer-mesh-motion
trilinos-autotester Sep 2, 2021
c5952c3
Merge remote-tracking branch 'origin/develop' into panzer-mini-em
Sep 2, 2021
07cd229
Adding fix to stop basis values from applying orientations to virtual…
seamill Sep 2, 2021
82b5ec6
Merge Pull Request #9654 from seamill/Trilinos/panzer_fix_for_virtual…
trilinos-autotester Sep 2, 2021
fce9580
Simplify the scatterDerivative function, to reduce the number of deep…
JacobDomagala Sep 3, 2021
9d0009c
have epetra stack going partially through
Sep 3, 2021
fda2a74
Fixed inv perm func
Sep 3, 2021
be9c70c
fixed centroid code
Sep 3, 2021
7f12fa8
more progress
Sep 3, 2021
6b92b5b
more progress
Sep 3, 2021
862f9d6
Merge Pull Request #9652 from NexGenAnalytics/Trilinos/JD_Panzer_UVM_Off
trilinos-autotester Sep 3, 2021
01e2430
have some memory access errors resolved
Sep 6, 2021
e2b0065
Have simple tpetra example working
Sep 6, 2021
a77cde4
another device access
Sep 6, 2021
87efd89
reset view ref to equalize count
Sep 6, 2021
1838653
Minor fixes in some of the source terms for examples
Sep 6, 2021
5d2e32a
Resolved UVM issues
Sep 7, 2021
5a757e2
Merge Pull Request #9667 from trilinos/Trilinos/panzer-source-fixes
trilinos-autotester Sep 7, 2021
0ced6a9
Merge Pull Request #9666 from trilinos/Trilinos/panzer-mini-em
trilinos-autotester Sep 7, 2021
695f36c
Merge Pull Request #9669 from trilinos/Trilinos/mixed-poisson
trilinos-autotester Sep 7, 2021
ffacb04
Merge Pull Request #9665 from trilinos/Trilinos/tpetra-gather
trilinos-autotester Sep 7, 2021
040a3a4
Fixed Dirichlet resid for edge basis and UVM
Sep 7, 2021
632e4aa
Fixed uvm error with building the sideset coords
Sep 7, 2021
2dc4669
Merge Pull Request #9670 from trilinos/Trilinos/edge-basis-resid
trilinos-autotester Sep 7, 2021
cece41b
Tpetra: added methods to replace Domain and Range maps in CrsMatrix …
kddevin Sep 7, 2021
686ca6c
Merge Pull Request #9671 from trilinos/Trilinos/build-sideset-workset
trilinos-autotester Sep 7, 2021
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6 changes: 3 additions & 3 deletions packages/framework/pr_tools/PullRequestLinuxCudaDriver.sh
Original file line number Diff line number Diff line change
Expand Up @@ -9,16 +9,16 @@ if [ "${Trilinos_CTEST_DO_ALL_AT_ONCE}" == "" ] ; then
fi

# comment out sh and add what we need individually.
#source $WORKSPACE/Trilinos/cmake/std/atdm/load-env.sh $JOB_NAME
#source $WORKSPACE/Trilinos/packages/framework/pr_tools/atdm/load-env.sh $JOB_NAME

set -x

#TODO: review appropriate job size
#cuda 10.1.105 will be built with rhel7G
if [[ "${JOB_NAME}" == "trilinos-folder/Trilinos_pullrequest_cuda_10.1.105"* ]] ; then
bsub -x -Is -q rhel7G -n 16 -J ${JOB_NAME} -W ${BSUB_CTEST_TIME_LIMIT} ${WORKSPACE}/Trilinos/cmake/std/PullRequestLinuxDriver.sh
bsub -x -Is -q rhel7G -n 16 -J ${JOB_NAME} -W ${BSUB_CTEST_TIME_LIMIT} ${WORKSPACE}/Trilinos/packages/framework/pr_tools/PullRequestLinuxDriver.sh
else
bsub -x -Is -q rhel7F -n 16 -J ${JOB_NAME} -W ${BSUB_CTEST_TIME_LIMIT} ${WORKSPACE}/Trilinos/cmake/std/PullRequestLinuxDriver.sh
bsub -x -Is -q rhel7F -n 16 -J ${JOB_NAME} -W ${BSUB_CTEST_TIME_LIMIT} ${WORKSPACE}/Trilinos/packages/framework/pr_tools/PullRequestLinuxDriver.sh
fi
# NOTE: Above, this bsub command should grab a single rhel7F (Firestone,
# Dual-Socket POWER8, 8 cores per socket, K80 GPUs) node. The option '-x'
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -9,13 +9,13 @@ if [ "${Trilinos_CTEST_DO_ALL_AT_ONCE}" == "" ] ; then
fi

# comment out sh and add what we need individually.
#source $WORKSPACE/Trilinos/cmake/std/atdm/load-env.sh $JOB_NAME
#source $WORKSPACE/Trilinos/packages/framework/pr_tools/atdm/load-env.sh $JOB_NAME

set -x

#TODO: review appropriate job size
bsub -Is -nnodes 2 -J ${JOB_NAME} -W ${BSUB_CTEST_TIME_LIMIT} \
${WORKSPACE}/Trilinos/cmake/std/PullRequestLinuxDriver.sh
${WORKSPACE}/Trilinos/packages/framework/pr_tools/PullRequestLinuxDriver.sh

# NOTE: Above, this bsub command should grab a two
# nodes. The option '-x' makes sure that only this
Expand Down
311 changes: 0 additions & 311 deletions packages/framework/pr_tools/PullRequestLinuxDriver-old.sh

This file was deleted.

12 changes: 6 additions & 6 deletions packages/framework/pr_tools/PullRequestLinuxDriver.sh
Original file line number Diff line number Diff line change
Expand Up @@ -70,10 +70,10 @@ test -d ${REPO_ROOT:?}/.git || REPO_ROOT=`readlink -f ${WORKSPACE:?}/Trilinos`
message_std "PRDriver> " "REPO_ROOT : ${REPO_ROOT}"

# Get the md5 checksum of this script:
sig_script_old=$(get_md5sum ${REPO_ROOT:?}/cmake/std/PullRequestLinuxDriver.sh)
sig_script_old=$(get_md5sum ${REPO_ROOT:?}/packages/framework/pr_tools/PullRequestLinuxDriver.sh)

# Get the md5 checksum of the Merge script
sig_merge_old=$(get_md5sum ${REPO_ROOT:?}/cmake/std/PullRequestLinuxDriverMerge.py)
sig_merge_old=$(get_md5sum ${REPO_ROOT:?}/packages/framework/pr_tools/PullRequestLinuxDriverMerge.py)


print_banner "Merge Source into Target"
Expand All @@ -87,7 +87,7 @@ merge_cmd_options=(
${TRILINOS_SOURCE_SHA:?}
${WORKSPACE:?}
)
merge_cmd="${PYTHON_EXE:?} ${REPO_ROOT:?}/cmake/std/PullRequestLinuxDriverMerge.py ${merge_cmd_options[@]}"
merge_cmd="${PYTHON_EXE:?} ${REPO_ROOT:?}/packages/framework/pr_tools/PullRequestLinuxDriverMerge.py ${merge_cmd_options[@]}"


# Call the script to handle merging the incoming branch into
Expand All @@ -105,13 +105,13 @@ print_banner "Merge completed"


# Get the md5 checksum of this script:
sig_script_new=$(get_md5sum ${REPO_ROOT:?}/cmake/std/PullRequestLinuxDriver.sh)
sig_script_new=$(get_md5sum ${REPO_ROOT:?}/packages/framework/pr_tools/PullRequestLinuxDriver.sh)
message_std "PRDriver> " "Old md5 checksum ${sig_script_old:?} for ${SCRIPTFILE:?}"
message_std "PRDriver> " "New md5 checksum ${sig_script_new:?} for ${SCRIPTFILE:?}"
message_std "PRDriver> " ""

# Get the md5 checksum of the Merge script
sig_merge_new=$(get_md5sum ${REPO_ROOT:?}/cmake/std/PullRequestLinuxDriverMerge.py)
sig_merge_new=$(get_md5sum ${REPO_ROOT:?}/packages/framework/pr_tools/PullRequestLinuxDriverMerge.py)
message_std "PRDriver> " "Old md5 checksum ${sig_merge_old:?} for ${SCRIPTPATH}/PullRequestLinuxDriverMerge.py"
message_std "PRDriver> " "New md5 checksum ${sig_merge_new:?} for ${SCRIPTPATH}/PullRequestLinuxDriverMerge.py"

Expand All @@ -120,7 +120,7 @@ then
message_std "PRDriver> " ""
message_std "PRDriver> " "Driver or Merge script change detected. Re-launching PR Driver"
message_std "PRDriver> " ""
${REPO_ROOT:?}/cmake/std/PullRequestLinuxDriver.sh
${REPO_ROOT:?}/packages/framework/pr_tools/PullRequestLinuxDriver.sh
exit $?
fi

Expand Down
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