Tpetra: fix race condition in transfers with AbsMax for CUDA_AWARE_MPI #3999

rppawlo · 2018-12-05T15:23:39Z

Changes to each package are in separate commits.

Thanks to Mark Hoemmen for the tpetra fix!

While these are not necessary to fix trilinos#3968, this cleans up some old and probably not so safe code. Mainly switching to using dual view semantics instead of the get 1d and 2d arrays and adding fences.

trilinos-autotester · 2018-12-05T16:05:51Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection Is Not Necessary for this Pull Request.

mhoemmen

Thanks @rppawlo ! I'll close #3996 and bring in its unit test later. See comments (things I'd like changed but not now).

mhoemmen · 2018-12-05T17:09:13Z

packages/panzer/dof-mgr/src/Panzer_DOFManager_impl.hpp

@@ -805,7 +810,7 @@ DOFManager<LO,GO>::buildGlobalUnknowns_GUN(const Tpetra::MultiVector<GO,LO,GO,pa

    // do a prefix sum
    GO scanResult = 0;
-    Teuchos::scan<int, GO> (*getComm(), Teuchos::REDUCE_SUM, static_cast<size_t> (localsum), Teuchos::outArg (scanResult));
+    Teuchos::scan<int, GO> (*getComm(), Teuchos::REDUCE_SUM, static_cast<int> (localsum), Teuchos::outArg (scanResult));


This is only helpful for removing warnings if GO is signed. You really want to cast localsum to GO since that's the type of the scan. It will get cast from int to GO here anyway.

thanks! will change

mhoemmen · 2018-12-05T17:11:52Z

packages/panzer/dof-mgr/src/Panzer_DOFManager_impl.hpp

@@ -930,7 +938,10 @@ DOFManager<LO,GO>::buildTaggedMultiVector(const ElementBlockAccess & ownedAccess

    // temporary working vector to fill each row in tagged array
    std::vector<int> working(overlap_mv->getNumVectors());
-    ArrayRCP<ArrayRCP<GO> > edittwoview = overlap_mv->get2dViewNonConst();
+    auto dual_view = overlap_mv->getDualView();


I would prefer that you not call getDualView. Please call the functions that get the Kokkos::View of the appropriate memory space directly. This is fine for now, but I do plan on getting rid of getDualView at some point, since it exposes an implementation detail that constrains Tpetra to have allocations on both sides at all times (it can't do lazy allocation).

ok. Will fix that as well.

mhoemmen · 2018-12-05T17:12:03Z

packages/panzer/dof-mgr/src/Panzer_DOFManager_impl.hpp

+    auto dual_view = overlap_mv->getDualView();
+    dual_view.sync_host();
+    PHX::Device::fence();
+    auto edittwoview_host = dual_view.view_host();
    for (size_t b = 0; b < blockOrder_.size(); ++b) {
      // there has to be a field pattern assocaited with the block


"associated"

mhoemmen · 2018-12-05T17:17:30Z

packages/panzer/dof-mgr/src/Panzer_DOFManager_impl.hpp

@@ -1304,7 +1322,10 @@ fillGIDsFromOverlappedMV(const ElementBlockAccess & access,
  using Teuchos::ArrayRCP;

  //To generate elementGIDs we need to go through all of the local elements.
-  ArrayRCP<ArrayRCP<const GO> > twoview = overlap_mv.get2dView();
+  auto dual_view = overlap_mv.getDualView();


See above. Get Kokkos::View objects from the Tpetra::MultiVector directly; don't access the DualView.

packages/panzer/dof-mgr/src/Panzer_DOFManager_impl.hpp

trilinos-autotester · 2018-12-05T17:29:10Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

Build Num: 1795
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`3ff9338`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3

Build Num: 2358
Status: STARTED

Jenkins Parameters

Parameter Name	Value
COMPILER_MODULE	sems-gcc/4.9.3
JENKINS_BUILD_TYPE	Release
JENKINS_COMM_TYPE	MPI
JENKINS_DO_COMPLEX	OFF
JENKINS_JOB_TYPE	Experimental
MPI_MODULE	sems-openmpi/1.8.7
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`3ff9338`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

Build Num: 2018
Status: STARTED

Jenkins Parameters

Parameter Name	Value
COMPILER_MODULE	sems-gcc/4.8.4
JENKINS_BUILD_TYPE	Release
JENKINS_COMM_TYPE	MPI
JENKINS_DO_COMPLEX	OFF
JENKINS_JOB_TYPE	Experimental
MPI_MODULE	sems-openmpi/1.8.7
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`3ff9338`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3_SERIAL

Build Num: 327
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`3ff9338`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

Using Repos:

Repo: TRILINOS (rppawlo/Trilinos)

Pull Request Author: rppawlo

rppawlo · 2018-12-05T17:47:38Z

@mhoemmen - I'm going to remove the automerge for now since I need to push the changes you requested.

trilinos-autotester · 2018-12-05T19:15:02Z

Status Flag 'Pull Request AutoTester' - Error: Jenkins Jobs - A user has commited a change to the PR before testing completed. The original testing SHA = 3ff9338 Does not match the current commit SHA = 5f91b56. The Jenkins Jobs will be shutdown; Testing of this PR must occur again.

trilinos-autotester · 2018-12-05T19:15:13Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

Build Num: 1795
Status: ERROR

Jenkins Parameters

Parameter Name	Value
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`3ff9338`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3

Build Num: 2358
Status: ERROR

Jenkins Parameters

Parameter Name	Value
COMPILER_MODULE	sems-gcc/4.9.3
JENKINS_BUILD_TYPE	Release
JENKINS_COMM_TYPE	MPI
JENKINS_DO_COMPLEX	OFF
JENKINS_JOB_TYPE	Experimental
MPI_MODULE	sems-openmpi/1.8.7
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`3ff9338`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

Build Num: 2018
Status: ERROR

Jenkins Parameters

Parameter Name	Value
COMPILER_MODULE	sems-gcc/4.8.4
JENKINS_BUILD_TYPE	Release
JENKINS_COMM_TYPE	MPI
JENKINS_DO_COMPLEX	OFF
JENKINS_JOB_TYPE	Experimental
MPI_MODULE	sems-openmpi/1.8.7
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`3ff9338`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3_SERIAL

Build Num: 327
Status: ERROR

Jenkins Parameters

Parameter Name	Value
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`3ff9338`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

Console Output (last 100 lines) : Trilinos_pullrequest_intel_17.0.1 # 1795 (click to expand)



*** Generating set of Trilinos enables given modified packages from

*** git commit origin/develop to HEAD

TRILINOS_DIR=/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_intel_17.0.1/Trilinos

TRILINOS_SCRIPTS_DIR=/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_intel_17.0.1/Trilinos

TRIBITS_DIR=/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_intel_17.0.1/Trilinos/cmake/tribits
A) Generate the Trilinos Packages definition and depencencies XML file
Wrote the file 'TrilinosPackageDependencies.xml'
B) Get the set of changed files
Current directory: /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_intel_17.0.1/Trilinos
git diff --name-only origin/develop..HEAD > /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_intel_17.0.1/changed-files.txt
Wrote file 'changed-files.txt'
Current directory: /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_intel_17.0.1
C) Get the unfiltered list of changed Trilinos packages (including 'ALL_PACKAGES')
CHANGED_PACKAGES_FULL_LIST='PanzerAdaptersSTK,PanzerDofMgr,TpetraCore'
D) Filter list of changed packages to get only the PT packages
CHANGED_PACKAGES_PT_LIST='PanzerAdaptersSTK,PanzerDofMgr,TpetraCore'
E) Generate the *.cmake enables file
Wrote file 'packageEnables.cmake'

set +x

Enabled packages:

-- Setting Trilinos_ENABLE_PanzerAdaptersSTK = ON

-- Setting Trilinos_ENABLE_PanzerDofMgr = ON

-- Setting Trilinos_ENABLE_TpetraCore = ON

Set CWD = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_intel_17.0.1/TFW_testing_single_configure_prototype

Build name               = PR-3999-test-Trilinos_pullrequest_intel_17.0.1-1795

Cur dir                  = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_intel_17.0.1/TFW_testing_single_configure_prototype

Source dir               = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_intel_17.0.1/Trilinos

Binary dir               = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_intel_17.0.1/pull_request_test

Parallel level           = 18

skip_by_parts_submit     = OFF

skip_single_submit       = ON

skip_update_step         = ON

skip_upload_config_files = OFF

skip_clean_build_dir     = OFF

Subproject count         = 53

Dashboard model          = Experimental

Dashboard track          = Pull Request

Running configuration:

/projects/sems/install/rhel6-x86_64/atdm/binary-install/cmake-3.11.1-Linux-x86_64/bin/cmake

-C "/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_intel_17.0.1/Trilinos/cmake/std/PullRequestLinuxIntelTestingSettings.cmake"

-C "/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_intel_17.0.1/packageEnables.cmake"

-DTrilinos_ENABLE_TESTS:BOOL=ON

-G "Ninja"

/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_intel_17.0.1/Trilinos

CTEST_DROP_LOCATION = /cdash/submit.php?project=Trilinos

CDash URL1 = https://testing-vm.sandia.gov/cdash/index.php?project=Trilinos&display=project&filtercount=3&showfilters=1&filtercombine=and&field1=site&compare1=61&value1=ascic158&field2=buildname&compare2=61&value2=PR-3999-test-Trilinos_pullrequest_intel_17.0.1-1795&field3=buildstamp&compare3=61&value3=20181205-1718-Pull Request

CDash URL2 = https://testing-vm.sandia.gov/cdash/index.php?project=Trilinos&display=project&filtercount=2&showfilters=0&filtercombine=and&field1=buildname&compare1=61&value1=PR-3999-test-Trilinos_pullrequest_intel_17.0.1-1795&field2=buildstamp&compare2=61&value2=20181205-1718-Pull Request

CDash URL3 = https://testing-vm.sandia.gov/cdash/index.php?project=Trilinos&filtercount=2&showfilters=0&filtercombine=and&field1=buildname&compare1=61&value1=PR-3999-test-Trilinos_pullrequest_intel_17.0.1-1795&field2=buildstamp&compare2=61&value2=20181205-1718-Pull Request

Starting configure step.

Each . represents 1024 bytes of output

..................................................  Size: 50K

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......................... Size of output: 274K

configure submit error = 0

Configure suceeded.

Starting build step.

Each symbol represents 1024 bytes of output.

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......................Build was aborted

Aborted by James M Willenbring

Archiving artifacts

Finished: ABORTED

Console Output (last 100 lines) : Trilinos_pullrequest_gcc_4.9.3 # 2358 (click to expand)


***
TRILINOS_DIR=/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3/Trilinos

TRILINOS_SCRIPTS_DIR=/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3/Trilinos

TRIBITS_DIR=/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3/Trilinos/cmake/tribits
A) Generate the Trilinos Packages definition and depencencies XML file
Wrote the file 'TrilinosPackageDependencies.xml'
B) Get the set of changed files
Current directory: /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3/Trilinos
git diff --name-only origin/develop..HEAD > /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3/changed-files.txt
Wrote file 'changed-files.txt'
Current directory: /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3
C) Get the unfiltered list of changed Trilinos packages (including 'ALL_PACKAGES')
CHANGED_PACKAGES_FULL_LIST='PanzerAdaptersSTK,PanzerDofMgr,TpetraCore'
D) Filter list of changed packages to get only the PT packages
CHANGED_PACKAGES_PT_LIST='PanzerAdaptersSTK,PanzerDofMgr,TpetraCore'
E) Generate the *.cmake enables file
Wrote file 'packageEnables.cmake'

set +x

Enabled packages:

-- Setting Trilinos_ENABLE_PanzerAdaptersSTK = ON

-- Setting Trilinos_ENABLE_PanzerDofMgr = ON

-- Setting Trilinos_ENABLE_TpetraCore = ON

Set CWD = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3/TFW_testing_single_configure_prototype

Build name               = PR-3999-test-Trilinos_pullrequest_gcc_4.9.3-2358

Cur dir                  = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3/TFW_testing_single_configure_prototype

Source dir               = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3/Trilinos

Binary dir               = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3/pull_request_test

Parallel level           = 18

skip_by_parts_submit     = OFF

skip_single_submit       = ON

skip_update_step         = ON

skip_upload_config_files = OFF

skip_clean_build_dir     = OFF

Subproject count         = 53

Dashboard model          = Experimental

Dashboard track          = Pull Request

Running configuration:

/projects/sems/install/rhel6-x86_64/atdm/binary-install/cmake-3.11.1-Linux-x86_64/bin/cmake

-C "/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3/Trilinos/cmake/std/PullRequestLinuxGCC4.9.3TestingSettings.cmake"

-C "/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3/packageEnables.cmake"

-DTrilinos_ENABLE_TESTS:BOOL=ON

-G "Ninja"

/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3/Trilinos

CTEST_DROP_LOCATION = /cdash/submit.php?project=Trilinos

CDash URL1 = https://testing-vm.sandia.gov/cdash/index.php?project=Trilinos&display=project&filtercount=3&showfilters=1&filtercombine=and&field1=site&compare1=61&value1=ascic142&field2=buildname&compare2=61&value2=PR-3999-test-Trilinos_pullrequest_gcc_4.9.3-2358&field3=buildstamp&compare3=61&value3=20181205-1721-Pull Request

CDash URL2 = https://testing-vm.sandia.gov/cdash/index.php?project=Trilinos&display=project&filtercount=2&showfilters=0&filtercombine=and&field1=buildname&compare1=61&value1=PR-3999-test-Trilinos_pullrequest_gcc_4.9.3-2358&field2=buildstamp&compare2=61&value2=20181205-1721-Pull Request

CDash URL3 = https://testing-vm.sandia.gov/cdash/index.php?project=Trilinos&filtercount=2&showfilters=0&filtercombine=and&field1=buildname&compare1=61&value1=PR-3999-test-Trilinos_pullrequest_gcc_4.9.3-2358&field2=buildstamp&compare2=61&value2=20181205-1721-Pull Request

Starting configure step.

Each . represents 1024 bytes of output

..................................................  Size: 50K

..................................................  Size: 100K

..................................................  Size: 150K

..................................................  Size: 200K

..................................................  Size: 250K

......................... Size of output: 274K

configure submit error = 0

Configure suceeded.

Starting build step.

Each symbol represents 1024 bytes of output.

..................................................  Size: 49K

..................................................  Size: 99K

..................................................  Size: 149K

..................................................  Size: 199K

..................................................  Size: 249K

..................................................  Size: 299K

..................................................  Size: 349K

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..................................................  Size: 499K

..................................................  Size: 549K

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..........

Console Output (last 100 lines) : Trilinos_pullrequest_gcc_4.8.4 # 2018 (click to expand)


***
*** Generating set of Trilinos enables given modified packages from
*** git commit origin/develop to HEAD
***
TRILINOS_DIR=/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.8.4/Trilinos

TRILINOS_SCRIPTS_DIR=/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.8.4/Trilinos

TRIBITS_DIR=/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.8.4/Trilinos/cmake/tribits
A) Generate the Trilinos Packages definition and depencencies XML file
Wrote the file 'TrilinosPackageDependencies.xml'
B) Get the set of changed files
Current directory: /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.8.4/Trilinos
git diff --name-only origin/develop..HEAD > /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.8.4/changed-files.txt
Wrote file 'changed-files.txt'
Current directory: /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.8.4
C) Get the unfiltered list of changed Trilinos packages (including 'ALL_PACKAGES')
CHANGED_PACKAGES_FULL_LIST='PanzerAdaptersSTK,PanzerDofMgr,TpetraCore'
D) Filter list of changed packages to get only the PT packages
CHANGED_PACKAGES_PT_LIST='PanzerAdaptersSTK,PanzerDofMgr,TpetraCore'
E) Generate the *.cmake enables file
Wrote file 'packageEnables.cmake'

set +x

Enabled packages:

-- Setting Trilinos_ENABLE_PanzerAdaptersSTK = ON

-- Setting Trilinos_ENABLE_PanzerDofMgr = ON

-- Setting Trilinos_ENABLE_TpetraCore = ON

Set CWD = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.8.4/TFW_testing_single_configure_prototype

Build name               = PR-3999-test-Trilinos_pullrequest_gcc_4.8.4-2018

Cur dir                  = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.8.4/TFW_testing_single_configure_prototype

Source dir               = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.8.4/Trilinos

Binary dir               = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.8.4/pull_request_test

Parallel level           = 18

skip_by_parts_submit     = OFF

skip_single_submit       = ON

skip_update_step         = ON

skip_upload_config_files = OFF

skip_clean_build_dir     = OFF

Subproject count         = 53

Dashboard model          = Experimental

Dashboard track          = Pull Request

Running configuration:

/projects/sems/install/rhel6-x86_64/atdm/binary-install/cmake-3.11.1-Linux-x86_64/bin/cmake

-C "/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.8.4/Trilinos/cmake/std/PullRequestLinuxGCC4.8.4TestingSettings.cmake"

-C "/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.8.4/packageEnables.cmake"

-DTrilinos_ENABLE_TESTS:BOOL=ON

-G "Ninja"

/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.8.4/Trilinos

CTEST_DROP_LOCATION = /cdash/submit.php?project=Trilinos

CDash URL1 = https://testing-vm.sandia.gov/cdash/index.php?project=Trilinos&display=project&filtercount=3&showfilters=1&filtercombine=and&field1=site&compare1=61&value1=ascic142&field2=buildname&compare2=61&value2=PR-3999-test-Trilinos_pullrequest_gcc_4.8.4-2018&field3=buildstamp&compare3=61&value3=20181205-1725-Pull Request

CDash URL2 = https://testing-vm.sandia.gov/cdash/index.php?project=Trilinos&display=project&filtercount=2&showfilters=0&filtercombine=and&field1=buildname&compare1=61&value1=PR-3999-test-Trilinos_pullrequest_gcc_4.8.4-2018&field2=buildstamp&compare2=61&value2=20181205-1725-Pull Request

CDash URL3 = https://testing-vm.sandia.gov/cdash/index.php?project=Trilinos&filtercount=2&showfilters=0&filtercombine=and&field1=buildname&compare1=61&value1=PR-3999-test-Trilinos_pullrequest_gcc_4.8.4-2018&field2=buildstamp&compare2=61&value2=20181205-1725-Pull Request

Starting configure step.

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........................... Size of output: 276K

configure submit error = 0

Configure suceeded.

Starting build step.

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....................................

Console Output (last 100 lines) : Trilinos_pullrequest_gcc_4.9.3_SERIAL # 327 (click to expand)


A) Generate the Trilinos Packages definition and depencencies XML file
Wrote the file 'TrilinosPackageDependencies.xml'
B) Get the set of changed files
Current directory: /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3_SERIAL/Trilinos
git diff --name-only origin/develop..HEAD > /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3_SERIAL/changed-files.txt
Wrote file 'changed-files.txt'
Current directory: /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3_SERIAL
C) Get the unfiltered list of changed Trilinos packages (including 'ALL_PACKAGES')
CHANGED_PACKAGES_FULL_LIST='PanzerAdaptersSTK,PanzerDofMgr,TpetraCore'
D) Filter list of changed packages to get only the PT packages
CHANGED_PACKAGES_PT_LIST='PanzerAdaptersSTK,PanzerDofMgr,TpetraCore'
E) Generate the *.cmake enables file
Wrote file 'packageEnables.cmake'

set +x

Enabled packages:

-- Setting Trilinos_ENABLE_PanzerAdaptersSTK = ON

-- Setting Trilinos_ENABLE_PanzerDofMgr = ON

-- Setting Trilinos_ENABLE_TpetraCore = ON

Set CWD = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3_SERIAL/TFW_testing_single_configure_prototype

Build name               = PR-3999-test-Trilinos_pullrequest_gcc_4.9.3_SERIAL-327

Cur dir                  = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3_SERIAL/TFW_testing_single_configure_prototype

Source dir               = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3_SERIAL/Trilinos

Binary dir               = /scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3_SERIAL/pull_request_test

Parallel level           = 18

skip_by_parts_submit     = OFF

skip_single_submit       = ON

skip_update_step         = ON

skip_upload_config_files = OFF

skip_clean_build_dir     = OFF

Subproject count         = 53

Dashboard model          = Experimental

Dashboard track          = Pull Request

Running configuration:

/projects/sems/install/rhel6-x86_64/atdm/binary-install/cmake-3.11.1-Linux-x86_64/bin/cmake

-C "/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3_SERIAL/Trilinos/cmake/std/PullRequestLinuxGCC4.9.3TestingSettingsSERIAL.cmake"

-C "/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3_SERIAL/packageEnables.cmake"

-DTrilinos_ENABLE_TESTS:BOOL=ON

-G "Ninja"

/scratch/trilinos/workspace/trilinos-folder/Trilinos_pullrequest_gcc_4.9.3_SERIAL/Trilinos

CTEST_DROP_LOCATION = /cdash/submit.php?project=Trilinos

CDash URL1 = https://testing-vm.sandia.gov/cdash/index.php?project=Trilinos&display=project&filtercount=3&showfilters=1&filtercombine=and&field1=site&compare1=61&value1=ascic115&field2=buildname&compare2=61&value2=PR-3999-test-Trilinos_pullrequest_gcc_4.9.3_SERIAL-327&field3=buildstamp&compare3=61&value3=20181205-1734-Pull Request

CDash URL2 = https://testing-vm.sandia.gov/cdash/index.php?project=Trilinos&display=project&filtercount=2&showfilters=0&filtercombine=and&field1=buildname&compare1=61&value1=PR-3999-test-Trilinos_pullrequest_gcc_4.9.3_SERIAL-327&field2=buildstamp&compare2=61&value2=20181205-1734-Pull Request

CDash URL3 = https://testing-vm.sandia.gov/cdash/index.php?project=Trilinos&filtercount=2&showfilters=0&filtercombine=and&field1=buildname&compare1=61&value1=PR-3999-test-Trilinos_pullrequest_gcc_4.9.3_SERIAL-327&field2=buildstamp&compare2=61&value2=20181205-1734-Pull Request

Starting configure step.

Each . represents 1024 bytes of output

..................................................  Size: 50K

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............. Size of output: 262K

configure submit error = 0

Configure suceeded.

Starting build step.

Each symbol represents 1024 bytes of output.

..................................................  Size: 49K

..................................................  Size: 99K

..................................................  Size: 149K

..................................................  Size: 199K

..................................................  Size: 249K

..................................................  Size: 299K

..................................................  Size: 349K

..................................................  Size: 399K

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.................................Build was aborted

Aborted by James M Willenbring

.................  Size: 1450K

...................................Finished: ABORTED

CDash Test Results for PR# 3999.

Wiki: How to Reproduce PR Testing Builds and Errors.

rppawlo · 2018-12-05T19:16:08Z

@mhoemmen - changes have been pushed. Could you review and reapprove?

trilinos-autotester · 2018-12-05T19:17:14Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection Is Not Necessary for this Pull Request.

trilinos-autotester · 2018-12-05T19:18:04Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

Build Num: 1798
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`5f91b56`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3

Build Num: 2361
Status: STARTED

Jenkins Parameters

Parameter Name	Value
COMPILER_MODULE	sems-gcc/4.9.3
JENKINS_BUILD_TYPE	Release
JENKINS_COMM_TYPE	MPI
JENKINS_DO_COMPLEX	OFF
JENKINS_JOB_TYPE	Experimental
MPI_MODULE	sems-openmpi/1.8.7
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`5f91b56`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

Build Num: 2020
Status: STARTED

Jenkins Parameters

Parameter Name	Value
COMPILER_MODULE	sems-gcc/4.8.4
JENKINS_BUILD_TYPE	Release
JENKINS_COMM_TYPE	MPI
JENKINS_DO_COMPLEX	OFF
JENKINS_JOB_TYPE	Experimental
MPI_MODULE	sems-openmpi/1.8.7
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`5f91b56`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3_SERIAL

Build Num: 329
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`5f91b56`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

Using Repos:

Repo: TRILINOS (rppawlo/Trilinos)

Pull Request Author: rppawlo

mhoemmen · 2018-12-05T19:50:28Z

packages/panzer/dof-mgr/src/Panzer_DOFManager_impl.hpp

    auto mv_size = values.extent(0);
-    Kokkos::parallel_reduce(mv_size,panzer::dof_functors::SumRank2<GO,KV>(values),localsum);
+    Kokkos::parallel_reduce(mv_size,panzer::dof_functors::SumRank2<GO,decltype(values)>(values),localsum);


In the future, please consider using an explicit RangePolicy instead of putting the dimension as the first argument of Kokkos::parallel_reduce. This would let you execute on the execution_space corresponding to Tpetra's data, rather than on Kokkos' default execution space. Tpetra's default execution space could differ from Kokkos' default execution space. (Some people really want Serial for Tpetra but CUDA for everything else.)

Will do. Looks like this functor was written in 2015 - before execution policies even existed :)

trilinos-autotester · 2018-12-05T23:38:25Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

Build Num: 1798
Status: PASSED

Jenkins Parameters

Parameter Name	Value
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`5f91b56`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3

Build Num: 2361
Status: PASSED

Jenkins Parameters

Parameter Name	Value
COMPILER_MODULE	sems-gcc/4.9.3
JENKINS_BUILD_TYPE	Release
JENKINS_COMM_TYPE	MPI
JENKINS_DO_COMPLEX	OFF
JENKINS_JOB_TYPE	Experimental
MPI_MODULE	sems-openmpi/1.8.7
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`5f91b56`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

Build Num: 2020
Status: PASSED

Jenkins Parameters

Parameter Name	Value
COMPILER_MODULE	sems-gcc/4.8.4
JENKINS_BUILD_TYPE	Release
JENKINS_COMM_TYPE	MPI
JENKINS_DO_COMPLEX	OFF
JENKINS_JOB_TYPE	Experimental
MPI_MODULE	sems-openmpi/1.8.7
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`5f91b56`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3_SERIAL

Build Num: 329
Status: PASSED

Jenkins Parameters

Parameter Name	Value
PULLREQUESTNUM	3999
TEST_REPO_ALIAS	TRILINOS
TRILINOS_SOURCE_BRANCH	3968-tpetra-cuda-aware-absmax
TRILINOS_SOURCE_REPO	https://github.com/rppawlo/Trilinos
TRILINOS_SOURCE_SHA	`5f91b56`
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`436a132`

CDash Test Results for PR# 3999.

trilinos-autotester · 2018-12-05T23:38:43Z

Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ mhoemmen ]!

trilinos-autotester · 2018-12-05T23:38:51Z

Status Flag 'Pull Request AutoTester' - Pull Request will be Automerged

trilinos-autotester · 2018-12-05T23:38:53Z

Merge on Pull Request# 3999: IS A SUCCESS - Pull Request successfully merged

@rppawlo

@trilinos/tpetra This was originally part of PR trilinos#3996. @rppawlo pushed an improved fix to trilinos#3968 first in PR trilinos#3999, which got merged. I thus deleted PR trilinos#3996. This commit includes just the unit test that was part of PR trilinos#3996, but not part of PR trilinos#3999.

rppawlo added 2 commits December 5, 2018 07:53

Tpetra: fix race condition in transfers with AbsMax for CUDA_AWARE_MPI …

c39e4db

…trilinos#3968 With M. Hoemmen

Panzer: cleanup for tpetra CUDA_AWARE_MPI

3ff9338

While these are not necessary to fix trilinos#3968, this cleans up some old and probably not so safe code. Mainly switching to using dual view semantics instead of the get 1d and 2d arrays and adding fences.

rppawlo added pkg: Tpetra pkg: Panzer AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed labels Dec 5, 2018

rppawlo self-assigned this Dec 5, 2018

rppawlo requested review from mhoemmen and etphipp December 5, 2018 15:23

rppawlo requested a review from a team as a code owner December 5, 2018 15:23

bartlettroscoe added the stage: in progress Work on the issue has started label Dec 5, 2018

rppawlo mentioned this pull request Dec 5, 2018

Tpetra: Possible OpenMPI bug; don't enable CUDA-aware MPI support #3968

Closed

3 tasks

etphipp previously approved these changes Dec 5, 2018

View reviewed changes

rppawlo mentioned this pull request Dec 5, 2018

Tpetra: Hopefully fix #3968 #3996

Closed

rppawlo removed the AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed label Dec 5, 2018

mhoemmen previously approved these changes Dec 5, 2018

View reviewed changes

mhoemmen added the AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed label Dec 5, 2018

rppawlo added AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) and removed AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed labels Dec 5, 2018

Panzer: dof manager cleanup

5f91b56

rppawlo dismissed stale reviews from mhoemmen and etphipp via 5f91b56 December 5, 2018 19:14

rppawlo added AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed and removed AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) labels Dec 5, 2018

mhoemmen approved these changes Dec 5, 2018

View reviewed changes

trilinos-autotester merged commit 3eabe8d into trilinos:develop Dec 5, 2018

trilinos-autotester removed the AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed label Dec 5, 2018

bartlettroscoe removed the stage: in progress Work on the issue has started label Dec 5, 2018

rppawlo deleted the 3968-tpetra-cuda-aware-absmax branch December 6, 2018 17:46

mhoemmen mentioned this pull request Dec 10, 2018

Tpetra: Add unit test for #3968 #4024

Merged

ndellingwood mentioned this pull request Dec 19, 2018

Tpetra compile error build with serial build + complex types with gcc/7.2 and gcc/7.3 #4095

Closed

trilinos-autotester mentioned this pull request Mar 26, 2021

Intrepid2: Work on CellTools to make it UVM free #8917

Merged

Tpetra: fix race condition in transfers with AbsMax for CUDA_AWARE_MPI #3999

Tpetra: fix race condition in transfers with AbsMax for CUDA_AWARE_MPI #3999

Conversation

rppawlo commented Dec 5, 2018

trilinos-autotester commented Dec 5, 2018

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trilinos-autotester commented Dec 5, 2018

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3_SERIAL

Jenkins Parameters

Using Repos:

rppawlo commented Dec 5, 2018

trilinos-autotester commented Dec 5, 2018

trilinos-autotester commented Dec 5, 2018

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3_SERIAL

Jenkins Parameters

rppawlo commented Dec 5, 2018

trilinos-autotester commented Dec 5, 2018

trilinos-autotester commented Dec 5, 2018

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3_SERIAL

Jenkins Parameters

Using Repos:

Choose a reason for hiding this comment

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trilinos-autotester commented Dec 5, 2018

Build Information

Test Name: Trilinos_pullrequest_intel_17.0.1

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_4.8.4

Jenkins Parameters

Build Information

Test Name: Trilinos_pullrequest_gcc_4.9.3_SERIAL

Jenkins Parameters

trilinos-autotester commented Dec 5, 2018

trilinos-autotester commented Dec 5, 2018

trilinos-autotester commented Dec 5, 2018