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Merge Pull Request #9508 from trilinos/Trilinos/master_merge_20210730…
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…_000542

Automatically Merged using Trilinos Master Merge AutoTester
PR Title: Trilinos Master Merge PR Generator: Auto PR created to promote from master_merge_20210730_000542 branch to master
PR Author: trilinos-autotester
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trilinos-autotester authored Aug 2, 2021
2 parents 5e14fa1 + 19be9ac commit a5b9f3d
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Showing 20 changed files with 703 additions and 258 deletions.
40 changes: 34 additions & 6 deletions packages/panzer/adapters-stk/src/stk_interface/Panzer_STK_CubeHexMeshFactory.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -171,8 +171,10 @@ void CubeHexMeshFactory::completeMeshConstruction(STK_Interface & mesh,stk::Para
}

mesh.buildLocalElementIDs();
if(buildSubcells_) {
if(createEdgeBlocks_) {
mesh.buildLocalEdgeIDs();
}
if(createFaceBlocks_) {
mesh.buildLocalFaceIDs();
}

Expand All @@ -181,8 +183,10 @@ void CubeHexMeshFactory::completeMeshConstruction(STK_Interface & mesh,stk::Para
// now that edges are built, side and node sets can be added
addSideSets(mesh);
addNodeSets(mesh);
if(buildSubcells_) {
if(createEdgeBlocks_) {
addEdgeBlocks(mesh);
}
if(createFaceBlocks_) {
addFaceBlocks(mesh);
}

Expand Down Expand Up @@ -223,6 +227,25 @@ void CubeHexMeshFactory::setParameterList(const Teuchos::RCP<Teuchos::ParameterL

buildSubcells_ = paramList->get<bool>("Build Subcells");

createEdgeBlocks_ = paramList->get<bool>("Create Edge Blocks");
createFaceBlocks_ = paramList->get<bool>("Create Face Blocks");
if (not buildSubcells_ && createEdgeBlocks_) {
Teuchos::FancyOStream out(Teuchos::rcpFromRef(std::cout));
out.setOutputToRootOnly(0);
out.setShowProcRank(true);

out << "CubeHexMesh: NOT creating edge blocks because building sub cells disabled" << std::endl;
createEdgeBlocks_ = false;
}
if (not buildSubcells_ && createFaceBlocks_) {
Teuchos::FancyOStream out(Teuchos::rcpFromRef(std::cout));
out.setOutputToRootOnly(0);
out.setShowProcRank(true);

out << "CubeHexMesh: NOT creating face blocks because building sub cells disabled" << std::endl;
createFaceBlocks_ = false;
}

// read in periodic boundary conditions
parsePeriodicBCList(Teuchos::rcpFromRef(paramList->sublist("Periodic BCs")),periodicBCVec_);
}
Expand Down Expand Up @@ -260,6 +283,10 @@ Teuchos::RCP<const Teuchos::ParameterList> CubeHexMeshFactory::getValidParameter

defaultParams->set<bool>("Build Subcells",true);

// default to false for backward compatibility
defaultParams->set<bool>("Create Edge Blocks",false,"Create edge blocks in the mesh");
defaultParams->set<bool>("Create Face Blocks",false,"Create face blocks in the mesh");

Teuchos::ParameterList & bcs = defaultParams->sublist("Periodic BCs");
bcs.set<int>("Count",0); // no default periodic boundary conditions
}
Expand All @@ -282,9 +309,6 @@ void CubeHexMeshFactory::buildMetaData(stk::ParallelMachine /* parallelMach */,
const CellTopologyData * ctd = shards::getCellTopologyData<HexTopo>();
const CellTopologyData * side_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(2,0);

const CellTopologyData * edge_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(1,0);
const CellTopologyData * face_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(2,0);

// build meta data
//mesh.setDimension(2);
for(int bx=0;bx<xBlocks_;bx++) {
Expand Down Expand Up @@ -329,8 +353,12 @@ void CubeHexMeshFactory::buildMetaData(stk::ParallelMachine /* parallelMach */,
// add nodesets
mesh.addNodeset("origin");

if(buildSubcells_) {
if(createEdgeBlocks_) {
const CellTopologyData * edge_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(1,0);
mesh.addEdgeBlock(panzer_stk::STK_Interface::edgeBlockString, edge_ctd);
}
if(createFaceBlocks_) {
const CellTopologyData * face_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(2,0);
mesh.addFaceBlock(panzer_stk::STK_Interface::faceBlockString, face_ctd);
}
}
Expand Down
2 changes: 2 additions & 0 deletions packages/panzer/adapters-stk/src/stk_interface/Panzer_STK_CubeHexMeshFactory.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -109,6 +109,8 @@ class CubeHexMeshFactory : public STK_MeshFactory {

bool buildInterfaceSidesets_;
bool buildSubcells_;
bool createEdgeBlocks_;
bool createFaceBlocks_;

mutable Teuchos::Tuple<std::size_t,3> procTuple_;
};
Expand Down
61 changes: 37 additions & 24 deletions packages/panzer/adapters-stk/src/stk_interface/Panzer_STK_CubeTetMeshFactory.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -156,14 +156,25 @@ void CubeTetMeshFactory::completeMeshConstruction(STK_Interface & mesh,stk::Para
// finish up the edges and faces
mesh.buildSubcells();
mesh.buildLocalElementIDs();
mesh.buildLocalEdgeIDs();
mesh.buildLocalFaceIDs();
if(createEdgeBlocks_) {
mesh.buildLocalEdgeIDs();
}
if(createFaceBlocks_) {
mesh.buildLocalFaceIDs();
}

// now that edges are built, sidets can be added
addSideSets(mesh);
addNodeSets(mesh);
addEdgeBlocks(mesh);
addFaceBlocks(mesh);

mesh.beginModification();
if(createEdgeBlocks_) {
addEdgeBlocks(mesh);
}
if(createFaceBlocks_) {
addFaceBlocks(mesh);
}
mesh.endModification();

// calls Stk_MeshFactory::rebalance
this->rebalance(mesh);
Expand Down Expand Up @@ -196,6 +207,9 @@ void CubeTetMeshFactory::setParameterList(const Teuchos::RCP<Teuchos::ParameterL
nYElems_ = paramList->get<int>("Y Elements");
nZElems_ = paramList->get<int>("Z Elements");

createEdgeBlocks_ = paramList->get<bool>("Create Edge Blocks");
createFaceBlocks_ = paramList->get<bool>("Create Face Blocks");

// read in periodic boundary conditions
parsePeriodicBCList(Teuchos::rcpFromRef(paramList->sublist("Periodic BCs")),periodicBCVec_);
}
Expand Down Expand Up @@ -229,6 +243,10 @@ Teuchos::RCP<const Teuchos::ParameterList> CubeTetMeshFactory::getValidParameter
defaultParams->set<int>("Y Elements",5);
defaultParams->set<int>("Z Elements",5);

// default to false for backward compatibility
defaultParams->set<bool>("Create Edge Blocks",false,"Create edge blocks in the mesh");
defaultParams->set<bool>("Create Face Blocks",false,"Create face blocks in the mesh");

Teuchos::ParameterList & bcs = defaultParams->sublist("Periodic BCs");
bcs.set<int>("Count",0); // no default periodic boundary conditions
}
Expand All @@ -251,9 +269,6 @@ void CubeTetMeshFactory::buildMetaData(stk::ParallelMachine /* parallelMach */,
const CellTopologyData * ctd = shards::getCellTopologyData<TetTopo>();
const CellTopologyData * side_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(2,0);

const CellTopologyData * edge_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(1,0);
const CellTopologyData * face_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(2,0);

// build meta data
//mesh.setDimension(2);
for(int bx=0;bx<xBlocks_;bx++) {
Expand All @@ -278,9 +293,15 @@ void CubeTetMeshFactory::buildMetaData(stk::ParallelMachine /* parallelMach */,
mesh.addSideset("back",side_ctd);

mesh.addNodeset("origin");

mesh.addEdgeBlock(panzer_stk::STK_Interface::edgeBlockString, edge_ctd);
mesh.addFaceBlock(panzer_stk::STK_Interface::faceBlockString, face_ctd);

if(createEdgeBlocks_) {
const CellTopologyData * edge_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(1,0);
mesh.addEdgeBlock(panzer_stk::STK_Interface::edgeBlockString, edge_ctd);
}
if(createFaceBlocks_) {
const CellTopologyData * face_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(2,0);
mesh.addFaceBlock(panzer_stk::STK_Interface::faceBlockString, face_ctd);
}
}

void CubeTetMeshFactory::buildElements(stk::ParallelMachine parallelMach,STK_Interface & mesh) const
Expand Down Expand Up @@ -603,40 +624,32 @@ void CubeTetMeshFactory::addNodeSets(STK_Interface & mesh) const
mesh.endModification();
}

// Pre-Condition: call beginModification() before entry
// Post-Condition: call endModification() after exit
void CubeTetMeshFactory::addEdgeBlocks(STK_Interface & mesh) const
{
mesh.beginModification();

stk::mesh::Part * edge_block = mesh.getEdgeBlock(panzer_stk::STK_Interface::edgeBlockString);

Teuchos::RCP<stk::mesh::BulkData> bulkData = mesh.getBulkData();
Teuchos::RCP<stk::mesh::MetaData> metaData = mesh.getMetaData();

std::vector<stk::mesh::Entity> edges;
bulkData->get_entities(mesh.getEdgeRank(),metaData->locally_owned_part(),edges);
for(auto edge : edges) {
mesh.addEntityToEdgeBlock(edge, edge_block);
}

mesh.endModification();
mesh.addEntitiesToEdgeBlock(edges, edge_block);
}

// Pre-Condition: call beginModification() before entry
// Post-Condition: call endModification() after exit
void CubeTetMeshFactory::addFaceBlocks(STK_Interface & mesh) const
{
mesh.beginModification();

stk::mesh::Part * face_block = mesh.getFaceBlock(panzer_stk::STK_Interface::faceBlockString);

Teuchos::RCP<stk::mesh::BulkData> bulkData = mesh.getBulkData();
Teuchos::RCP<stk::mesh::MetaData> metaData = mesh.getMetaData();

std::vector<stk::mesh::Entity> faces;
bulkData->get_entities(mesh.getFaceRank(),metaData->locally_owned_part(),faces);
for(auto face : faces) {
mesh.addEntityToFaceBlock(face, face_block);
}

mesh.endModification();
mesh.addEntitiesToFaceBlock(faces, face_block);
}

//! Convert processor rank to a tuple
Expand Down
3 changes: 3 additions & 0 deletions packages/panzer/adapters-stk/src/stk_interface/Panzer_STK_CubeTetMeshFactory.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -112,6 +112,9 @@ class CubeTetMeshFactory : public STK_MeshFactory {
mutable unsigned int machRank_, machSize_;

mutable Teuchos::Tuple<std::size_t,3> procTuple_;

bool createEdgeBlocks_;
bool createFaceBlocks_;
};

}
Expand Down
5 changes: 1 addition & 4 deletions packages/panzer/adapters-stk/src/stk_interface/Panzer_STK_ExodusReaderFactory.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -363,7 +363,6 @@ void STK_ExodusReaderFactory::setParameterList(const Teuchos::RCP<Teuchos::Param
levelsOfRefinement_ = paramList->get<int>("Levels of Uniform Refinement");

createEdgeBlocks_ = paramList->get<bool>("Create Edge Blocks");

createFaceBlocks_ = paramList->get<bool>("Create Face Blocks");
}

Expand Down Expand Up @@ -401,10 +400,8 @@ Teuchos::RCP<const Teuchos::ParameterList> STK_ExodusReaderFactory::getValidPara

validParams->set("Rebalancing","default","The type of rebalancing to be performed on the mesh after creation (default, none)");

// default to false to prevent massive exodiff test failures
// default to false for backward compatibility
validParams->set("Create Edge Blocks",false,"Create or copy edge blocks in the mesh");

// default to false to prevent massive exodiff test failures
validParams->set("Create Face Blocks",false,"Create or copy face blocks in the mesh");
}

Expand Down
33 changes: 33 additions & 0 deletions packages/panzer/adapters-stk/src/stk_interface/Panzer_STK_SquareQuadMeshFactory.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -160,6 +160,9 @@ void SquareQuadMeshFactory::completeMeshConstruction(STK_Interface & mesh,stk::P
mesh.buildSubcells();
#endif
mesh.buildLocalElementIDs();
if(createEdgeBlocks_) {
mesh.buildLocalEdgeIDs();
}

// now that edges are built, sidsets can be added
#ifndef ENABLE_UNIFORM
Expand All @@ -169,6 +172,10 @@ void SquareQuadMeshFactory::completeMeshConstruction(STK_Interface & mesh,stk::P
// add nodesets
addNodeSets(mesh);

if(createEdgeBlocks_) {
addEdgeBlocks(mesh);
}

// calls Stk_MeshFactory::rebalance
this->rebalance(mesh);
}
Expand Down Expand Up @@ -197,6 +204,8 @@ void SquareQuadMeshFactory::setParameterList(const Teuchos::RCP<Teuchos::Paramet

offsetGIDs_ = (paramList->get<std::string>("Offset mesh GIDs above 32-bit int limit") == "ON") ? true : false;

createEdgeBlocks_ = paramList->get<bool>("Create Edge Blocks");

// read in periodic boundary conditions
parsePeriodicBCList(Teuchos::rcpFromRef(paramList->sublist("Periodic BCs")),periodicBCVec_);
}
Expand Down Expand Up @@ -225,6 +234,9 @@ Teuchos::RCP<const Teuchos::ParameterList> SquareQuadMeshFactory::getValidParame
defaultParams->set<int>("X Elements",5);
defaultParams->set<int>("Y Elements",5);

// default to false for backward compatibility
defaultParams->set<bool>("Create Edge Blocks",false,"Create edge blocks in the mesh");

Teuchos::setStringToIntegralParameter<int>(
"Offset mesh GIDs above 32-bit int limit",
"OFF",
Expand Down Expand Up @@ -293,6 +305,11 @@ void SquareQuadMeshFactory::buildMetaData(stk::ParallelMachine /* parallelMach *
// add nodesets
mesh.addNodeset("lower_left");
mesh.addNodeset("origin");

if(createEdgeBlocks_) {
const CellTopologyData * edge_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(1,0);
mesh.addEdgeBlock(panzer_stk::STK_Interface::edgeBlockString, edge_ctd);
}
}

void SquareQuadMeshFactory::buildElements(stk::ParallelMachine parallelMach,STK_Interface & mesh) const
Expand Down Expand Up @@ -559,6 +576,22 @@ void SquareQuadMeshFactory::addNodeSets(STK_Interface & mesh) const
mesh.endModification();
}

void SquareQuadMeshFactory::addEdgeBlocks(STK_Interface & mesh) const
{
mesh.beginModification();

stk::mesh::Part * edge_block = mesh.getEdgeBlock(panzer_stk::STK_Interface::edgeBlockString);

Teuchos::RCP<stk::mesh::BulkData> bulkData = mesh.getBulkData();
Teuchos::RCP<stk::mesh::MetaData> metaData = mesh.getMetaData();

std::vector<stk::mesh::Entity> edges;
bulkData->get_entities(mesh.getEdgeRank(),metaData->locally_owned_part(),edges);
mesh.addEntitiesToEdgeBlock(edges, edge_block);

mesh.endModification();
}

//! Convert processor rank to a tuple
Teuchos::Tuple<std::size_t,2> SquareQuadMeshFactory::procRankToProcTuple(std::size_t procRank) const
{
Expand Down
3 changes: 3 additions & 0 deletions packages/panzer/adapters-stk/src/stk_interface/Panzer_STK_SquareQuadMeshFactory.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -96,6 +96,7 @@ class SquareQuadMeshFactory : public STK_MeshFactory {

void addSideSets(STK_Interface & mesh) const;
void addNodeSets(STK_Interface & mesh) const;
void addEdgeBlocks(STK_Interface & mesh) const;

double x0_, y0_;
double xf_, yf_;
Expand All @@ -108,6 +109,8 @@ class SquareQuadMeshFactory : public STK_MeshFactory {
mutable unsigned int machRank_, machSize_;
mutable Teuchos::Tuple<std::size_t,2> procTuple_;

bool createEdgeBlocks_;

/// If true, offset mesh GIDs to exercise 32-bit limits.
bool offsetGIDs_;
mutable stk::mesh::EntityId offset_;
Expand Down
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