PR #327 (solving existing conflicts) + dead modules option #332
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(1) Local merge of PR #327 (solving existing conflicts):
-> No visible change, as expected.
-> Very slight change, as expected (due to typo fix in cleaning parameters).
All other iterations, for both SIMVAL and SIMVALSEED: http://uaf-10.t2.ucsd.edu/~mmasciov/MkFit_devs/SVA_pr327/
--> Will close PR #327 as this PR effectively replaces it.
(2) Add optionality for dead modules (in standalone mkFit):
-> As expected, when dead modules are used efficiency is lower, despite # hits/ track is higher:
http://uaf-10.t2.ucsd.edu/~mmasciov/MkFit_devs/SVA_deadModulesOption/simvalseed_iter4/quality/?match=nHits*fit_pt0p0
All other iterations, for both SIMVAL and SIMVALSEED: http://uaf-10.t2.ucsd.edu/~mmasciov/MkFit_devs/SVA_deadModulesOption/