The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.

Cytoscape plugin for neo4j

Cytoscape App for connecting to a Gremlin/TinkerPop Server

cy3sbml: SBML for Cytoscape 3

3D Graph Renderer for Cytoscape using OpenGL

The AutoAnnotate Cytoscape App finds clusters of nodes and visually annotates them with semantic labels and groups.

A maximum common subgraph tool for Cytoscape

Omics Visualizer App for Cytoscape 3

Connect Cytoscape and SAP HANA to enable import, export and visualization of graph data stored in SAP HANA.

ScyNet: Visualisation of community metabolic models in Cytoscape

IDARE - Multiomics Visualisation in Cytoscape

An app for Cytoscape 3.9.1+ to visualize software dependency graph.

Ontologiebasierte Navigation für CION

IntAct App is a Cytoscape Application dedicated to the creation of molecular interaction networks, based on the IntAct database

The CyEnGNet-App is a plugin for Cytoscape. It implements the EnGNet algorithm, a powerful network analysis method. This app allows users to directly generate the output network in Cytoscape.

Small Cytoscape App to give unique identifiers to nodes, persistent within a session.

A plugin developed to add Cytoscape JS layouts to Cytoscape

Programming materials for java lang

A Cytoscape app to perform weighted k-shell decomposition