Unable to install via Devtools

[Oneiricer]

Hi Mitch
Thanks once again for your talks and contribution to this package. I'm not sure why i cannot seem to install this dev package. Currently using R 3.5.2. Do i need to downgrade R in order to install via devtools?

>devtools::install_github("tidyverts/fable")
Downloading GitHub repo tidyverts/fable@master
Error in process_initialize(self, private, command, args, stdin, stdout,  : 
  Command not found
In addition: Warning messages:
1: In untar2(tarfile, files, list, exdir) :
  skipping pax global extended headers
2: In untar2(tarfile, files, list, exdir) :
  skipping pax global extended headers

[mitchelloharawild]

Are you able to install any packages via devtools?

[Oneiricer]

on my work laptop, unable to install any packages via devtools.
i thought i'd try from my home desktop, and it does install quite a few packages. It asks me to update a lot of packages, either via CRAN or all. i picked CRAN for most of them.

However after a few rounds of that, it failed here:

Skipping tsibble, it is already being installed
Error in vapply(remotes, install_remote, ..., FUN.VALUE = character(1)) : 
  values must be type 'character',
 but FUN(X[[1]]) result is type 'logical'

[mitchelloharawild]

Interesting, not sure why that would happen - certainly not specific to the fable package. Do you have the latest version of devtools? The fable package requires a compiler, so if you are using windows you may need Rtools to install from GitHub.

[slavarazbash]

I also cannot install the fable component, fablelite. I am using mac. Freshly installed devtools. I can install other packages with devtools - dplyr successfully installed from github.

`> devtools::install_github("tidyverts/fable")
Downloading GitHub repo tidyverts/fable@master
Downloading GitHub repo tidyverts/fablelite@master
✔ checking for file ‘/private/var/folders/d4/wq9zkp0j0rz8tzmdx12wpb6m0000gn/T/RtmpnCFJ8l/remotes96e313af9c4/tidyverts-fablelite-87cdee8/DESCRIPTION’ ...
─ preparing ‘fablelite’:
✔ checking DESCRIPTION meta-information ...
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ building ‘fablelite_0.0.0.9100.tar.gz’

• installing source package ‘fablelite’ ...
  ** R
  ** inst
  ** byte-compile and prepare package for lazy loading
  Error : object ‘tbl_sum’ is not exported by 'namespace:tsibble'
  ERROR: lazy loading failed for package ‘fablelite’
• removing ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library/fablelite’
  Error in i.p(...) :
  (converted from warning) installation of package ‘/var/folders/d4/wq9zkp0j0rz8tzmdx12wpb6m0000gn/T//RtmpnCFJ8l/file96e42392ac/fablelite_0.0.0.9100.tar.gz’ had non-zero exit status`

[mitchelloharawild]

Please try installing the cran version of tsibble and then try again.

…

On Fri., 1 Feb. 2019, 9:55 am slavarazbash ***@***.*** wrote: I also cannot install the fable component, fablelite. I am using mac. Freshly installed devtools. I can install other packages with devtools - dplyr successfully installed from github. `> devtools::install_github("tidyverts/fable") Downloading GitHub repo ***@***.*** Downloading GitHub repo ***@***.*** ✔ checking for file ‘/private/var/folders/d4/wq9zkp0j0rz8tzmdx12wpb6m0000gn/T/RtmpnCFJ8l/remotes96e313af9c4/tidyverts-fablelite-87cdee8/DESCRIPTION’ ... ─ preparing ‘fablelite’: ✔ checking DESCRIPTION meta-information ... ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories ─ building ‘fablelite_0.0.0.9100.tar.gz’ - installing *source* package ‘fablelite’ ... ** R ** inst ** byte-compile and prepare package for lazy loading Error : object ‘tbl_sum’ is not exported by 'namespace:tsibble' ERROR: lazy loading failed for package ‘fablelite’ - removing ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library/fablelite’ Error in i.p(...) : (converted from warning) installation of package ‘/var/folders/d4/wq9zkp0j0rz8tzmdx12wpb6m0000gn/T//RtmpnCFJ8l/file96e42392ac/fablelite_0.0.0.9100.tar.gz’ had non-zero exit status` — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#99 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/APYUl1nS7gIq79FWZLJuUGzPllCiAIoCks5vI56MgaJpZM4aELq2> .

[slavarazbash]

Still cannot install. Different error message this time:

1. Installed the CRAN version of tsibble.

2.1. It asks me upgrade tsibble but I decline. See output below.

> devtools::install_github("tidyverts/fable")
Downloading GitHub repo tidyverts/fable@master
These packages have more recent versions available.
Which would you like to update?

1:   tsibble (0.6.2 -> b4b802c98...) [GitHub]

Enter one or more numbers separated by spaces, or an empty line to cancel
1: 
Downloading GitHub repo tidyverts/fablelite@master
These packages have more recent versions available.
Which would you like to update?

1:   tsibble (0.6.2 -> b4b802c98...) [GitHub]

Enter one or more numbers separated by spaces, or an empty line to cancel
1: 
✔  checking for file ‘/private/var/folders/d4/wq9zkp0j0rz8tzmdx12wpb6m0000gn/T/RtmpnCFJ8l/remotes96e2c85ff54/tidyverts-fablelite-87cdee8/DESCRIPTION’ (471ms)
─  preparing ‘fablelite’:
✔  checking DESCRIPTION meta-information ...
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  building ‘fablelite_0.0.0.9100.tar.gz’
   
* installing *source* package ‘fablelite’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded
* DONE (fablelite)
✔  checking for file ‘/private/var/folders/d4/wq9zkp0j0rz8tzmdx12wpb6m0000gn/T/RtmpnCFJ8l/remotes96e2de06fcc/tidyverts-fable-a61ecfa/DESCRIPTION’ ...
─  preparing ‘fable’:
✔  checking DESCRIPTION meta-information ...
─  cleaning src
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  building ‘fable_0.0.0.9100.tar.gz’
   
* installing *source* package ‘fable’ ...
** libs
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c etsTargetFunction.cpp -o etsTargetFunction.o
In file included from etsTargetFunction.cpp:7:
In file included from ./etsTargetFunction.h:3:
In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp.h:27:
In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/RcppCommon.h:128:
/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call
      itself [-Winfinite-recursion]
    inline void warning(const std::string& message) {        // #nocov start
                                                    ^
1 warning generated.
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c etsTargetFunctionWrapper.cpp -o etsTargetFunctionWrapper.o
In file included from etsTargetFunctionWrapper.cpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp.h:27:
In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/RcppCommon.h:128:
/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call
      itself [-Winfinite-recursion]
    inline void warning(const std::string& message) {        // #nocov start
                                                    ^
1 warning generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c etscalc.c -o etscalc.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c etspolyroot.c -o etspolyroot.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fable.so etsTargetFunction.o etsTargetFunctionWrapper.o etscalc.o etspolyroot.o registerDynamicSymbol.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0'
ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
ld: library not found for -lgfortran
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [fable.so] Error 1
ERROR: compilation failed for package ‘fable’
* removing ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library/fable’
Error in i.p(...) : 
  (converted from warning) installation of package ‘/var/folders/d4/wq9zkp0j0rz8tzmdx12wpb6m0000gn/T//RtmpnCFJ8l/file96e3be566d4/fable_0.0.0.9100.tar.gz’ had non-zero exit status

2.2 I tried with upgrading tsibble when it asks me. Also with an error. See output below.

> devtools::install_github("tidyverts/fable")
Downloading GitHub repo tidyverts/fable@master
These packages have more recent versions available.
Which would you like to update?

1:   tsibble (0.6.2 -> b4b802c98...) [GitHub]

Enter one or more numbers separated by spaces, or an empty line to cancel
1: 1
tsibble (0.6.2 -> b4b802c98...) [GitHub]
Downloading GitHub repo tidyverts/tsibble@master
✔  checking for file ‘/private/var/folders/d4/wq9zkp0j0rz8tzmdx12wpb6m0000gn/T/RtmpnCFJ8l/remotes96e31ce35e8/tidyverts-tsibble-b4b802c/DESCRIPTION’ (404ms)
─  preparing ‘tsibble’:
✔  checking DESCRIPTION meta-information ...
─  cleaning src
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  looking to see if a ‘data/datalist’ file should be added
─  building ‘tsibble_0.6.2.9000.tar.gz’
   
* installing *source* package ‘tsibble’ ...
** libs
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c time-wise.cpp -o time-wise.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c utils.cpp -o utils.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o tsibble.so RcppExports.o time-wise.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/tsibble/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (tsibble)
✔  checking for file ‘/private/var/folders/d4/wq9zkp0j0rz8tzmdx12wpb6m0000gn/T/RtmpnCFJ8l/remotes96e3d67434c/tidyverts-fable-a61ecfa/DESCRIPTION’ ...
─  preparing ‘fable’:
✔  checking DESCRIPTION meta-information ...
─  cleaning src
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  building ‘fable_0.0.0.9100.tar.gz’
   
* installing *source* package ‘fable’ ...
** libs
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c etsTargetFunction.cpp -o etsTargetFunction.o
In file included from etsTargetFunction.cpp:7:
In file included from ./etsTargetFunction.h:3:
In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp.h:27:
In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/RcppCommon.h:128:
/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call
      itself [-Winfinite-recursion]
    inline void warning(const std::string& message) {        // #nocov start
                                                    ^
1 warning generated.
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c etsTargetFunctionWrapper.cpp -o etsTargetFunctionWrapper.o
In file included from etsTargetFunctionWrapper.cpp:10:
In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp.h:27:
In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/RcppCommon.h:128:
/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call
      itself [-Winfinite-recursion]
    inline void warning(const std::string& message) {        // #nocov start
                                                    ^
1 warning generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c etscalc.c -o etscalc.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c etspolyroot.c -o etspolyroot.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fable.so etsTargetFunction.o etsTargetFunctionWrapper.o etscalc.o etspolyroot.o registerDynamicSymbol.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0'
ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
ld: library not found for -lgfortran
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [fable.so] Error 1
ERROR: compilation failed for package ‘fable’
* removing ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library/fable’
Error in i.p(...) : 
  (converted from warning) installation of package ‘/var/folders/d4/wq9zkp0j0rz8tzmdx12wpb6m0000gn/T//RtmpnCFJ8l/file96e3fc1dc0b/fable_0.0.0.9100.tar.gz’ had non-zero exit status

[slavarazbash]

devtools::install_github("tidyverts/[email protected]") does not work either.

[earowang]

Can you restart R/RStudio and use tsibble cran version?

[slavarazbash]

Can you restart R/RStudio and use tsibble cran version?

It still does not work

[mitchelloharawild]

I've updated the package to work with dplyr v0.8.0 and the latest development version of tsibble.
Please try installing the fablelite package from GitHub:

# install.packages("devtools")
devtools::install_github("tidyverts/fablelite")

[mitchelloharawild]

Please refer to #107 to resolve this issue.